We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

E. caballus Gene: PRPF4 - ENSECAG00000007072 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000007072
NamePRPF4
Descriptionpre-mRNA processing factor 4 [Source:HGNC Symbol;Acc:HGNC:17349]
OrganismEquus caballus (horse)
Synonym(s)hprp4, hprp4p, prp4, prp4p, snrnp60
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
4.94e3
  • 4.94e3
78.59
  • 78.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
4.98e3
  • 4.98e3
  • 6.42e3
  • 7.08e3
  • 7.21e3
78.42
  • 78.42
  • 72.19
  • 69.31
  • 68.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
5.30e3
  • 5.30e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.58e3
  • 5.58e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
5.70e3
  • 5.70e3
75.28
  • 75.28
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.76e3
  • 5.76e3
  • 6.22e3
75.05
  • 75.05
  • 73.03
AEIR
  • AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
5.83e3
  • 5.83e3
74.74
  • 74.74
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
5.88e3
  • 5.88e3
74.52
  • 74.52
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
6.47e3
  • 6.47e3
  • 7.15e3
71.95
  • 71.95
  • 69.01
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.52e3
  • 6.52e3
  • 6.53e3
71.75
  • 71.75
  • 71.70
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
6.84e3
  • 6.84e3
70.34
  • 70.34
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
7.02e3
  • 7.02e3
69.58
  • 69.58
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
7.28e3
  • 7.28e3
  • 7.37e3
68.46
  • 68.46
  • 68.03
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
7.33e3
  • 7.33e3
68.23
  • 68.23
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
7.36e3
  • 7.36e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
7.45e3
  • 7.45e3
67.71
  • 67.71
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
7.61e3
  • 7.61e3
66.99
  • 66.99
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
7.93e3
  • 7.93e3
65.63
  • 65.63
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
8.02e3
  • 8.02e3
65.25
  • 65.25
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
8.42e3
  • 8.42e3
63.49
  • 63.49
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
8.91e3
  • 8.91e3
61.36
  • 61.36
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.31e3
  • 9.31e3
59.62
  • 59.62
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.05e4
55.07
  • 55.07
  • 54.65
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSECAG00000007072.

Cross-references

EnsemblENSECAG00000007072 (PRPF4)
HGNCHGNC:17349 (PRPF4)
Uniprot/SPTREMBLF7CKR6, F7CKR6_HORSE

Do not show this banner again