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E. caballus Gene: COL21A1 - ENSECAG00000009887 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000009887
NameCOL21A1
Descriptioncollagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
OrganismEquus caballus (horse)
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.72e3
  • 1.72e3
  • 7.55e3
  • 9.10e3
  • 9.19e3
92.53
  • 92.53
  • 67.27
  • 60.57
  • 60.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
4.72e3
  • 4.72e3
79.52
  • 79.52
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
4.92e3
  • 4.92e3
78.67
  • 78.67
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.02e3
  • 8.02e3
  • 9.46e3
65.24
  • 65.24
  • 58.99
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.59e3
  • 9.59e3
  • 1.07e4
58.41
  • 58.41
  • 53.54
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.00e4
  • 1.00e4
56.54
  • 56.54
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
52.69
  • 52.69
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.10e4
  • 1.10e4
52.45
  • 52.45
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
52.08
  • 52.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.13e4
  • 1.13e4
  • 1.16e4
50.82
  • 50.82
  • 49.51
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
49.87
  • 49.87
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.18e4
  • 1.18e4
48.92
  • 48.92
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
45.14
  • 45.14
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
44.17
  • 44.17
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
  • 1.34e4
44.17
  • 44.17
  • 42.12
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
42.71
  • 42.71
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
42.17
  • 42.17
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
41.06
  • 41.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria8 species8 genesCompare expression
Theria9 species9 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSECAG00000009887.

Cross-references

EnsemblENSECAG00000009887 (COL21A1)
HGNCHGNC:17025 (COL21A1)
Uniprot/SPTREMBLF6S2J9, F6S2J9_HORSE, F6S2L9, F6S2L9_HORSE

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