We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

E. caballus Gene: LSAMP - ENSECAG00000012530 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000012530
NameLSAMP
Descriptionlimbic system-associated membrane protein [Source:HGNC Symbol;Acc:HGNC:6705]
OrganismEquus caballus (horse)
Synonym(s)iglon3, lamp
Orthologs(s)22 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.08e3
  • 1.08e3
95.31
  • 95.31
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.23e3
  • 1.23e3
  • 1.38e3
94.66
  • 94.66
  • 94.01
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.58e3
  • 1.58e3
93.13
  • 93.13
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.70e3
  • 1.70e3
  • 2.00e3
92.64
  • 92.64
  • 91.32
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
2.71e3
  • 2.71e3
88.24
  • 88.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
5.23e3
  • 5.23e3
  • 5.30e3
  • 6.56e3
  • 1.26e4
77.35
  • 77.35
  • 77.01
  • 71.55
  • 45.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
8.06e3
  • 8.06e3
65.04
  • 65.04
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
8.52e3
  • 8.52e3
63.05
  • 63.05
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
9.99e3
  • 9.99e3
56.70
  • 56.70
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.15e4
  • 1.15e4
50.28
  • 50.28
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
49.78
  • 49.78
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
48.93
  • 48.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 1.27e4
48.61
  • 48.61
  • 44.85
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
  • 1.35e4
46.61
  • 46.61
  • 41.43
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
44.12
  • 44.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
42.88
  • 42.88
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
42.70
  • 42.70
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
39.19
  • 39.19
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.43e4
  • 1.43e4
37.93
  • 37.93
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
35.28
  • 35.28
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
1.98e4
  • 1.98e4
14.15
  • 14.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSECAG00000012530.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000012530.

Cross-references

EnsemblENSECAG00000012530 (LSAMP)
HGNCHGNC:6705 (LSAMP)
Uniprot/SPTREMBLF6SR97, F6SR97_HORSE

Do not show this banner again