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E. caballus Gene: PNLDC1 - ENSECAG00000012898 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000012898
NamePNLDC1
DescriptionPARN like, ribonuclease domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21185]
OrganismEquus caballus (horse)
Synonym(s)dj195p10.2, flj40240
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
2.96e3
  • 2.96e3
  • 3.76e3
  • 3.84e3
  • 8.70e3
87.16
  • 87.16
  • 83.72
  • 83.36
  • 62.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.07e4
  • 1.07e4
  • 1.18e4
53.79
  • 53.79
  • 49.01
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.13e4
  • 1.13e4
  • 1.23e4
51.11
  • 51.11
  • 46.81
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
49.04
  • 49.04
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.20e4
  • 1.20e4
  • 1.20e4
48.16
  • 48.16
  • 48.10
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
44.55
  • 44.55
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.13
  • 43.13
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
40.39
  • 40.39
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
38.23
  • 38.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
  • 1.55e4
37.59
  • 37.59
  • 32.80
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
37.10
  • 37.10
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
35.08
  • 35.08
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
34.74
  • 34.74
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
32.38
  • 32.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
30.46
  • 30.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression

Orthology information comes from OMA : ENSECAG00000012898.

Cross-references

EnsemblENSECAG00000012898 (PNLDC1)
HGNCHGNC:21185 (PNLDC1)
Uniprot/SPTREMBLF6SFG8, F6SFG8_HORSE

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