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E. caballus Gene: CHMP6 - ENSECAG00000012902 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000012902
NameCHMP6
Descriptioncharged multivesicular body protein 6 [Source:HGNC Symbol;Acc:HGNC:25675]
OrganismEquus caballus (horse)
Synonym(s)flj11749, vps20
Orthologs(s)23 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.06e3
  • 1.06e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.32e3
  • 1.32e3
  • 1.80e3
  • 1.82e3
  • 1.96e3
94.29
  • 94.29
  • 92.20
  • 92.11
  • 91.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.44e3
  • 1.44e3
93.75
  • 93.75
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.58e3
  • 1.58e3
93.17
  • 93.17
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.59e3
  • 1.59e3
  • 1.77e3
93.12
  • 93.12
  • 92.33
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.70e3
  • 1.70e3
  • 1.80e3
92.63
  • 92.63
  • 92.20
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
1.77e3
  • 1.77e3
92.31
  • 92.31
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.93e3
  • 1.93e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
91.41
  • 91.41
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
2.06e3
  • 2.06e3
91.09
  • 91.09
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.31e3
  • 2.31e3
  • 2.51e3
90.01
  • 90.01
  • 89.12
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
2.32e3
  • 2.32e3
89.96
  • 89.96
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
2.60e3
  • 2.60e3
88.74
  • 88.74
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
2.94e3
  • 2.94e3
87.25
  • 87.25
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.22e3
  • 3.22e3
86.05
  • 86.05
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
3.33e3
  • 3.33e3
  • 3.82e3
85.57
  • 85.57
  • 83.44
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
3.89e3
  • 3.89e3
83.14
  • 83.14
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
4.07e3
  • 4.07e3
82.37
  • 82.37
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
4.38e3
  • 4.38e3
81.00
  • 81.00
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
4.68e3
  • 4.68e3
  • 5.38e3
79.70
  • 79.70
  • 76.68
AEIR
  • AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
4.70e3
  • 4.70e3
79.65
  • 79.65
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
4.86e3
  • 4.86e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
4.88e3
  • 4.88e3
78.84
  • 78.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSECAG00000012902.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota4 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000012902.

Cross-references

EnsemblENSECAG00000012902 (CHMP6)
HGNCHGNC:25675 (CHMP6)
Uniprot/SPTREMBLF6SFH9, F6SFH9_HORSE

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