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E. caballus Gene: TCEA1 - ENSECAG00000013436 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000013436
NameTCEA1
Descriptiontranscription elongation factor A (SII), 1 [Source:HGNC Symbol;Acc:HGNC:11612]
OrganismEquus caballus (horse)
Synonym(s)gtf2s, sii, tcea, tf2s, tfiis
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
867
  • 867
96.25
  • 96.25
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.00e3
  • 1.00e3
  • 1.12e3
95.66
  • 95.66
  • 95.15
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.12e3
  • 1.12e3
95.15
  • 95.15
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.27e3
  • 1.27e3
94.52
  • 94.52
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.35e3
  • 1.35e3
  • 2.15e3
94.17
  • 94.17
  • 90.67
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.47e3
  • 1.47e3
  • 2.12e3
  • 2.13e3
  • 4.07e3
93.62
  • 93.62
  • 90.81
  • 90.77
  • 82.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.62e3
  • 1.62e3
92.96
  • 92.96
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.65e3
  • 1.65e3
92.85
  • 92.85
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.68e3
  • 1.68e3
92.72
  • 92.72
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.69e3
  • 1.69e3
92.68
  • 92.68
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.72e3
  • 1.72e3
92.55
  • 92.55
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.77e3
  • 1.77e3
92.34
  • 92.34
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.95e3
  • 1.95e3
91.55
  • 91.55
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
2.24e3
  • 2.24e3
90.27
  • 90.27
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
2.47e3
  • 2.47e3
89.29
  • 89.29
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.47e3
  • 2.47e3
  • 2.87e3
89.28
  • 89.28
  • 87.56
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
2.57e3
  • 2.57e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
2.59e3
  • 2.59e3
88.79
  • 88.79
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.63e3
  • 2.63e3
  • 2.80e3
88.59
  • 88.59
  • 87.85
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
3.16e3
  • 3.16e3
86.29
  • 86.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.21e3
  • 3.21e3
  • 3.43e3
86.11
  • 86.11
  • 85.14
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
3.45e3
  • 3.45e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
3.85e3
  • 3.85e3
83.32
  • 83.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Theria5 species8 genesCompare expression
Mammalia6 species9 genesCompare expression
Amniota8 species11 genesCompare expression
Tetrapoda9 species12 genesCompare expression
Euteleostomi10 species13 genesCompare expression
Bilateria16 species19 genesCompare expression

Orthology information comes from OMA : ENSECAG00000013436.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000013436.

Cross-references

EnsemblENSECAG00000013436 (TCEA1)
HGNCHGNC:11612 (TCEA1)
Uniprot/SPTREMBLF6ZUQ5, F6ZUQ5_HORSE

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