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E. caballus Gene: VPS16 - ENSECAG00000013499 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000013499
NameVPS16
DescriptionVPS16, CORVET/HOPS core subunit [Source:HGNC Symbol;Acc:HGNC:14584]
OrganismEquus caballus (horse)
Synonym(s)vps16a
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
3.01e3
  • 3.01e3
  • 4.45e3
  • 4.46e3
  • 4.55e3
86.94
  • 86.94
  • 80.71
  • 80.67
  • 80.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
3.08e3
  • 3.08e3
86.67
  • 86.67
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
3.30e3
  • 3.30e3
  • 3.43e3
85.71
  • 85.71
  • 85.11
AEIR
  • AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
3.76e3
  • 3.76e3
83.71
  • 83.71
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
4.46e3
  • 4.46e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
4.53e3
  • 4.53e3
80.35
  • 80.35
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
4.73e3
  • 4.73e3
79.49
  • 79.49
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
4.98e3
  • 4.98e3
78.41
  • 78.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
5.10e3
  • 5.10e3
77.87
  • 77.87
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.12e3
  • 5.12e3
  • 5.42e3
77.83
  • 77.83
  • 76.51
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
5.17e3
  • 5.17e3
77.58
  • 77.58
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.19e3
  • 5.19e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.75e3
  • 5.75e3
75.07
  • 75.07
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.77e3
  • 5.77e3
  • 5.90e3
74.98
  • 74.98
  • 74.41
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
6.13e3
  • 6.13e3
73.45
  • 73.45
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
6.13e3
  • 6.13e3
73.44
  • 73.44
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
6.15e3
  • 6.15e3
73.33
  • 73.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.19e3
  • 7.19e3
  • 7.20e3
68.82
  • 68.82
  • 68.80
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
7.35e3
  • 7.35e3
68.15
  • 68.15
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
8.03e3
  • 8.03e3
65.17
  • 65.17
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
8.41e3
  • 8.41e3
63.53
  • 63.53
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
8.98e3
  • 8.98e3
61.09
  • 61.09
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.36e3
  • 9.36e3
  • 9.66e3
59.41
  • 59.41
  • 58.13
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.00e4
  • 1.00e4
56.53
  • 56.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSECAG00000013499.

Cross-references

EnsemblENSECAG00000013499 (VPS16)
HGNCHGNC:14584 (VPS16)
Uniprot/SPTREMBLF6ZWT5, F6ZWT5_HORSE

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