We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

E. caballus Gene: ERCC6 - ENSECAG00000014160 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000014160
NameERCC6
Descriptionexcision repair cross-complementation group 6 [Source:HGNC Symbol;Acc:HGNC:3438]
OrganismEquus caballus (horse)
Synonym(s)armd5, ckn2, csb, rad26
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
7.05e3
  • 7.05e3
69.44
  • 69.44
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
7.36e3
  • 7.36e3
68.08
  • 68.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
8.18e3
  • 8.18e3
64.52
  • 64.52
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.79e3
  • 8.79e3
  • 9.41e3
61.89
  • 61.89
  • 59.22
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
8.95e3
  • 8.95e3
61.22
  • 61.22
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
9.02e3
  • 9.02e3
60.89
  • 60.89
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.08e3
  • 9.08e3
  • 9.18e3
60.62
  • 60.62
  • 60.19
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
9.63e3
  • 9.63e3
58.26
  • 58.26
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
9.72e3
  • 9.72e3
57.86
  • 57.86
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
9.76e3
  • 9.76e3
57.69
  • 57.69
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
9.89e3
  • 9.89e3
57.13
  • 57.13
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
9.90e3
  • 9.90e3
57.08
  • 57.08
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
9.91e3
  • 9.91e3
57.06
  • 57.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.95e3
  • 9.95e3
  • 1.01e4
  • 1.07e4
  • 1.09e4
56.86
  • 56.86
  • 56.37
  • 53.68
  • 52.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
9.96e3
  • 9.96e3
56.82
  • 56.82
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.00e4
  • 1.00e4
56.49
  • 56.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
55.52
  • 55.52
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.04e4
54.96
  • 54.96
  • 54.92
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.05e4
  • 1.05e4
  • 1.05e4
54.58
  • 54.58
  • 54.42
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
53.93
  • 53.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
  • 1.10e4
53.87
  • 53.87
  • 52.50
AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
52.98
  • 52.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSECAG00000014160.

Cross-references

EnsemblENSECAG00000014160 (ERCC6)
HGNCHGNC:3438 (ERCC6)
Uniprot/SPTREMBLF7D5S6, F7D5S6_HORSE

Do not show this banner again