E. caballus Gene: COL18A1 - ENSECAG00000016361 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000016361
NameCOL18A1
Descriptioncollagen, type XVIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2195]
OrganismEquus caballus (horse)
Synonym(s)kno, kno1, ks
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0018241prime adult stage
318
  • 318
98.63
  • 98.63
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
621
  • 621
97.31
  • 97.31
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
625
  • 625
97.30
  • 97.30
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.70e3
  • 1.70e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.89e3
  • 1.89e3
91.82
  • 91.82
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
2.03e3
  • 2.03e3
91.21
  • 91.21
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
3.26e3
  • 3.26e3
85.87
  • 85.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
3.38e3
  • 3.38e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
3.65e3
  • 3.65e3
84.20
  • 84.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.06e3
  • 4.06e3
  • 6.18e3
  • 7.91e3
  • 8.56e3
82.40
  • 82.40
  • 73.22
  • 65.73
  • 62.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
4.79e3
  • 4.79e3
79.23
  • 79.23
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
6.94e3
  • 6.94e3
69.92
  • 69.92
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
7.71e3
  • 7.71e3
66.56
  • 66.56
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
8.46e3
  • 8.46e3
  • 8.55e3
63.33
  • 63.33
  • 62.95
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.55e3
  • 8.55e3
  • 9.59e3
62.92
  • 62.92
  • 58.45
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.73e3
  • 8.73e3
62.15
  • 62.15
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
9.07e3
  • 9.07e3
60.69
  • 60.69
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.23e3
  • 9.23e3
  • 9.97e3
59.97
  • 59.97
  • 56.77
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
9.59e3
  • 9.59e3
  • 1.08e4
58.41
  • 58.41
  • 53.38
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
49.85
  • 49.85
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.24e4
  • 1.24e4
  • 1.31e4
46.40
  • 46.40
  • 43.21
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.36e4
  • 1.36e4
41.22
  • 41.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSECAG00000016361.

Cross-references

EnsemblENSECAG00000016361 (COL18A1)
HGNCHGNC:2195 (COL18A1)
Uniprot/SPTREMBLF6XHX6, F6XHX6_HORSE, F6XNR9, F6XNR9_HORSE

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