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E. caballus Gene: SAMSN1 - ENSECAG00000017241 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000017241
NameSAMSN1
DescriptionSAM domain, SH3 domain and nuclear localization signals 1 [Source:HGNC Symbol;Acc:HGNC:10528]
OrganismEquus caballus (horse)
Synonym(s)hacs1, nash1, sash2, sh3d6b, sly2
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.59e3
  • 1.59e3
  • 1.84e3
93.12
  • 93.12
  • 92.04
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
2.51e3
  • 2.51e3
89.12
  • 89.12
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
3.11e3
  • 3.11e3
86.54
  • 86.54
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
7.42e3
  • 7.42e3
  • 8.58e3
67.84
  • 67.84
  • 62.81
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
7.97e3
  • 7.97e3
65.43
  • 65.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.67e3
  • 9.67e3
  • 1.09e4
  • 1.22e4
  • 1.33e4
58.09
  • 58.09
  • 52.85
  • 47.29
  • 42.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
56.00
  • 56.00
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
54.75
  • 54.75
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
54.12
  • 54.12
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
53.76
  • 53.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.15e4
51.89
  • 51.89
  • 50.07
AEIR
  • AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
51.82
  • 51.82
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.13e4
  • 1.13e4
  • 1.20e4
50.85
  • 50.85
  • 48.15
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
47.07
  • 47.07
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
40.65
  • 40.65
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
39.96
  • 39.96
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
37.28
  • 37.28
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
34.94
  • 34.94
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.50e4
  • 1.50e4
  • 1.53e4
34.88
  • 34.88
  • 33.54
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
29.20
  • 29.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSECAG00000017241.

Cross-references

EnsemblENSECAG00000017241 (SAMSN1)
HGNCHGNC:10528 (SAMSN1)
Uniprot/SPTREMBLF6ZWG6, F6ZWG6_HORSE

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