We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

E. caballus Gene: PCDH17 - ENSECAG00000017321 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000017321
NamePCDH17
Descriptionprotocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
OrganismEquus caballus (horse)
Synonym(s)pcdh68, pch68
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
6.27e3
  • 6.27e3
72.81
  • 72.81
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
6.93e3
  • 6.93e3
69.98
  • 69.98
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.07e3
  • 7.07e3
69.33
  • 69.33
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
7.15e3
  • 7.15e3
  • 7.18e3
68.98
  • 68.98
  • 68.89
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
7.50e3
  • 7.50e3
67.49
  • 67.49
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.66e3
  • 7.66e3
  • 7.84e3
66.80
  • 66.80
  • 66.03
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
7.67e3
  • 7.67e3
66.77
  • 66.77
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
8.01e3
  • 8.01e3
  • 8.20e3
65.29
  • 65.29
  • 64.47
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
9.08e3
  • 9.08e3
  • 9.25e3
60.62
  • 60.62
  • 59.90
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
50.15
  • 50.15
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
47.31
  • 47.31
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
46.95
  • 46.95
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
44.03
  • 44.03
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.20
  • 43.20
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
  • 1.45e4
43.15
  • 43.15
  • 37.16
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
39.57
  • 39.57
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.42e4
  • 1.42e4
38.49
  • 38.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
33.26
  • 33.26
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
28.45
  • 28.45
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.87e4
  • 1.87e4
19.00
  • 19.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSECAG00000017321.

Cross-references

EnsemblENSECAG00000017321 (PCDH17)
HGNCHGNC:14267 (PCDH17)
Uniprot/SPTREMBLF7A6C3, F7A6C3_HORSE

Do not show this banner again