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E. caballus Gene: TUB - ENSECAG00000019305 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019305
NameTUB
Descriptiontubby bipartite transcription factor [Source:HGNC Symbol;Acc:HGNC:12406]
OrganismEquus caballus (horse)
Synonym(s)rd5
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
4.57e3
  • 4.57e3
  • 4.72e3
80.20
  • 80.20
  • 79.53
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.99e3
  • 4.99e3
78.35
  • 78.35
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
7.68e3
  • 7.68e3
66.72
  • 66.72
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
8.56e3
  • 8.56e3
  • 9.01e3
62.90
  • 62.90
  • 60.93
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
8.69e3
  • 8.69e3
62.34
  • 62.34
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
8.74e3
  • 8.74e3
62.10
  • 62.10
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
9.00e3
  • 9.00e3
61.00
  • 61.00
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
9.25e3
  • 9.25e3
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
55.01
  • 55.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.09e4
  • 1.09e4
  • 1.26e4
  • 1.33e4
  • 1.34e4
52.92
  • 52.92
  • 45.46
  • 42.27
  • 42.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
46.28
  • 46.28
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
41.07
  • 41.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
38.92
  • 38.92
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.43e4
  • 1.43e4
37.84
  • 37.84
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
  • 1.49e4
37.49
  • 37.49
  • 35.50
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
33.06
  • 33.06
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
32.82
  • 32.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSECAG00000019305.

Cross-references

EnsemblENSECAG00000019305 (TUB)
HGNCHGNC:12406 (TUB)
Uniprot/SPTREMBLF7E3G9, F7E3G9_HORSE

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