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E. caballus Gene: CDH18 - ENSECAG00000019320 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019320
NameCDH18
Descriptioncadherin 18, type 2 [Source:HGNC Symbol;Acc:HGNC:1757]
OrganismEquus caballus (horse)
Synonym(s)cdh14, ey-cadherin
Orthologs(s)18 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.41e3
  • 3.41e3
  • 5.46e3
85.20
  • 85.20
  • 76.33
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.90e3
  • 6.90e3
70.09
  • 70.09
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
9.40e3
  • 9.40e3
59.24
  • 59.24
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.30e4
46.24
  • 46.24
  • 43.78
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.25e4
  • 1.25e4
45.83
  • 45.83
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.28e4
  • 1.28e4
  • 1.29e4
  • 1.51e4
  • 1.68e4
44.67
  • 44.67
  • 44.19
  • 34.41
  • 27.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
28.91
  • 28.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.71e4
  • 1.71e4
25.65
  • 25.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression

Orthology information comes from OMA : ENSECAG00000019320.

Paralogs (same species)

Paralogy information comes from OMA : ENSECAG00000019320.

Cross-references

EnsemblENSECAG00000019320 (CDH18)
HGNCHGNC:1757 (CDH18)
Uniprot/SPTREMBLF7BLF0, F7BLF0_HORSE

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