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E. caballus Gene: PDCD5 - ENSECAG00000019406 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019406
NamePDCD5
Descriptionprogrammed cell death 5 [Source:HGNC Symbol;Acc:HGNC:8764]
OrganismEquus caballus (horse)
Synonym(s)mgc9294, tfar19
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
339
  • 339
  • 345
  • 363
  • 2.21e3
98.54
  • 98.54
  • 98.51
  • 98.43
  • 90.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
551
  • 551
  • 656
97.62
  • 97.62
  • 97.16
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
614
  • 614
  • 693
97.34
  • 97.34
  • 97.00
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
683
  • 683
97.05
  • 97.05
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
923
  • 923
96.00
  • 96.00
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
941
  • 941
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
957
  • 957
  • 1.33e3
95.86
  • 95.86
  • 94.23
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.12e3
  • 1.12e3
95.14
  • 95.14
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.13e3
  • 1.13e3
95.09
  • 95.09
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.30e3
  • 1.30e3
94.39
  • 94.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.58e3
  • 1.58e3
93.14
  • 93.14
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.72e3
  • 1.72e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.99e3
  • 1.99e3
91.38
  • 91.38
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
2.16e3
  • 2.16e3
90.65
  • 90.65
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
2.22e3
  • 2.22e3
90.38
  • 90.38
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
2.47e3
  • 2.47e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
2.55e3
  • 2.55e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.93e3
  • 3.93e3
  • 4.14e3
82.96
  • 82.96
  • 82.05
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
4.31e3
  • 4.31e3
81.31
  • 81.31
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
4.73e3
  • 4.73e3
79.49
  • 79.49
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
4.78e3
  • 4.78e3
79.26
  • 79.26
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
5.15e3
  • 5.15e3
  • 6.72e3
77.67
  • 77.67
  • 70.85
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species25 genesCompare expression

Orthology information comes from OMA : ENSECAG00000019406.

Cross-references

EnsemblENSECAG00000019406 (PDCD5)
HGNCHGNC:8764 (PDCD5)
Uniprot/SPTREMBLF7BLG9, F7BLG9_HORSE

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