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E. caballus Gene: HERC6 - ENSECAG00000019411 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019411
NameHERC6
DescriptionHECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]
OrganismEquus caballus (horse)
Synonym(s)flj20637
Orthologs(s)15 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
869
  • 869
  • 913
96.24
  • 96.24
  • 96.05
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
2.11e3
  • 2.11e3
90.86
  • 90.86
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
7.32e3
  • 7.32e3
  • 8.06e3
68.28
  • 68.28
  • 65.04
AEIR
  • AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
8.21e3
  • 8.21e3
64.41
  • 64.41
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
8.56e3
  • 8.56e3
62.88
  • 62.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
8.78e3
  • 8.78e3
61.96
  • 61.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.99e3
  • 8.99e3
  • 9.73e3
61.04
  • 61.04
  • 57.81
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
9.00e3
  • 9.00e3
60.99
  • 60.99
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
9.05e3
  • 9.05e3
60.76
  • 60.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
9.86e3
  • 9.86e3
57.24
  • 57.24
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
9.98e3
  • 9.98e3
  • 1.19e4
56.72
  • 56.72
  • 48.62
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
53.86
  • 53.86
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
53.02
  • 53.02
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
  • 1.12e4
  • 1.28e4
  • 1.33e4
52.73
  • 52.73
  • 51.63
  • 44.52
  • 42.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
46.26
  • 46.26
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.34e4
46.14
  • 46.14
  • 41.95
AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
44.63
  • 44.63
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.04
  • 43.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSECAG00000019411.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000019411.

Cross-references

EnsemblENSECAG00000019411 (HERC6)
HGNCHGNC:26072 (HERC6)
Uniprot/SPTREMBLF7DYN4, F7DYN4_HORSE

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