E. caballus Gene: COL6A2 - ENSECAG00000019436 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019436
NameCOL6A2
Descriptioncollagen, type VI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2212]
OrganismEquus caballus (horse)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
37.7
  • 37.7
99.84096
  • 99.84096
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
97.5
  • 97.5
99.58143
  • 99.58143
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
283
  • 283
98.77504
  • 98.77504
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
632
  • 632
97.26140
  • 97.26140
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
907
  • 907
96.06900
  • 96.06900
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.28e3
  • 1.28e3
94.43857
  • 94.43857
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.79e3
  • 1.79e3
92.25008
  • 92.25008
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.25e3
  • 2.25e3
  • 3.35e3
  • 5.55e3
  • 8.72e3
90.23299
  • 90.23299
  • 85.46303
  • 75.95090
  • 62.19565
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
2.55e3
  • 2.55e3
88.93677
  • 88.93677
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.75e3
  • 2.75e3
  • 3.16e3
88.07620
  • 88.07620
  • 86.32086
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
3.10e3
  • 3.10e3
86.56065
  • 86.56065
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
3.16e3
  • 3.16e3
86.29397
  • 86.29397
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.36e3
  • 4.36e3
  • 4.80e3
81.10058
  • 81.10058
  • 79.17509
AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
4.73e3
  • 4.73e3
79.48463
  • 79.48463
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
6.14e3
  • 6.14e3
73.35443
  • 73.35443
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
7.59e3
  • 7.59e3
  • 7.90e3
67.07902
  • 67.07902
  • 65.74142
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
7.87e3
  • 7.87e3
  • 1.00e4
65.88502
  • 65.88502
  • 56.60754
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
8.94e3
  • 8.94e3
61.24539
  • 61.24539
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.26e3
  • 9.26e3
59.85978
  • 59.85978
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.27e4
  • 1.27e4
44.85115
  • 44.85115
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.47e4
  • 1.47e4
  • 1.51e4
36.13081
  • 36.13081
  • 34.71930
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000019436 (COL6A2)
HGNCHGNC:2212 (COL6A2)
Uniprot/SPTREMBLF7CGV8, F7CGV8_HORSE

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