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E. caballus Gene: SFT2D1 - ENSECAG00000019479 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019479
NameSFT2D1
DescriptionSFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
OrganismEquus caballus (horse)
Synonym(s)c6orf83, mgc19825, prgr1
Orthologs(s)24 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
934
  • 934
95.96
  • 95.96
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
975
  • 975
  • 1.60e3
95.78
  • 95.78
  • 93.07
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.14e3
  • 1.14e3
  • 1.26e3
95.07
  • 95.07
  • 94.54
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
1.59e3
  • 1.59e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.94e3
  • 1.94e3
91.61
  • 91.61
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
2.15e3
  • 2.15e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.18e3
  • 2.18e3
  • 3.64e3
  • 3.84e3
  • 3.86e3
90.54
  • 90.54
  • 84.24
  • 83.35
  • 83.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
2.19e3
  • 2.19e3
90.51
  • 90.51
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
2.26e3
  • 2.26e3
90.21
  • 90.21
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
2.27e3
  • 2.27e3
90.17
  • 90.17
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.62e3
  • 2.62e3
88.65
  • 88.65
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
3.05e3
  • 3.05e3
86.76
  • 86.76
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
3.12e3
  • 3.12e3
86.48
  • 86.48
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.34e3
  • 3.34e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
3.47e3
  • 3.47e3
  • 3.94e3
84.96
  • 84.96
  • 82.90
AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
3.82e3
  • 3.82e3
83.43
  • 83.43
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.83e3
  • 3.83e3
  • 4.42e3
83.40
  • 83.40
  • 80.85
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
4.01e3
  • 4.01e3
  • 4.59e3
82.64
  • 82.64
  • 80.09
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
5.01e3
  • 5.01e3
78.27
  • 78.27
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
5.17e3
  • 5.17e3
77.61
  • 77.61
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
5.31e3
  • 5.31e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
6.96e3
  • 6.96e3
69.81
  • 69.81
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
7.10e3
  • 7.10e3
69.23
  • 69.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria10 species11 genesCompare expression
Theria11 species12 genesCompare expression
Mammalia12 species13 genesCompare expression
Amniota13 species14 genesCompare expression
Tetrapoda14 species15 genesCompare expression
Euteleostomi15 species16 genesCompare expression
Bilateria22 species24 genesCompare expression

Orthology information comes from OMA : ENSECAG00000019479.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSECAG00000019479.

Cross-references

EnsemblENSECAG00000019479 (SFT2D1)
HGNCHGNC:21102 (SFT2D1)
Uniprot/SPTREMBLF6V6D6, F6V6D6_HORSE

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