E. caballus Gene: LRRC40 - ENSECAG00000019554 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019554
NameLRRC40
Descriptionleucine rich repeat containing 40 [Source:HGNC Symbol;Acc:HGNC:26004]
OrganismEquus caballus (horse)
Synonym(s)flj20331

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.85e3
  • 1.85e3
91.99137
  • 91.99137
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
3.51e3
  • 3.51e3
84.77378
  • 84.77378
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
3.61e3
  • 3.61e3
84.33231
  • 84.33231
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.74e3
  • 3.74e3
  • 3.91e3
83.79503
  • 83.79503
  • 83.04636
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
5.14e3
  • 5.14e3
77.72585
  • 77.72585
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.64e3
  • 5.64e3
  • 7.19e3
75.52656
  • 75.52656
  • 68.83961
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.99e3
  • 5.99e3
74.02689
  • 74.02689
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
6.15e3
  • 6.15e3
  • 6.99e3
73.32506
  • 73.32506
  • 69.69814
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.57e3
  • 6.57e3
  • 7.85e3
71.49239
  • 71.49239
  • 65.96773
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
6.68e3
  • 6.68e3
71.02164
  • 71.02164
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
7.52e3
  • 7.52e3
  • 8.04e3
  • 8.49e3
  • 1.30e4
67.39810
  • 67.39810
  • 65.14724
  • 63.19530
  • 43.52331
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
7.52e3
  • 7.52e3
67.37373
  • 67.37373
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
7.76e3
  • 7.76e3
66.35508
  • 66.35508
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
7.81e3
  • 7.81e3
66.15271
  • 66.15271
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.16e3
  • 8.16e3
  • 9.23e3
64.61951
  • 64.61951
  • 59.98157
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
8.38e3
  • 8.38e3
63.64488
  • 63.64488
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
8.56e3
  • 8.56e3
62.88884
  • 62.88884
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.82e3
  • 8.82e3
61.76597
  • 61.76597
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
8.87e3
  • 8.87e3
61.52192
  • 61.52192
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
9.03e3
  • 9.03e3
60.85744
  • 60.85744
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
9.85e3
  • 9.85e3
57.30216
  • 57.30216
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
55.76584
  • 55.76584
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000019554 (LRRC40)
HGNCHGNC:26004 (LRRC40)
Uniprot/SPTREMBLF7CGE1, F7CGE1_HORSE, F7CGH2, F7CGH2_HORSE

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