E. caballus Gene: VPS13B - ENSECAG00000019852 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000019852
NameVPS13B
Descriptionvacuolar protein sorting 13 homolog B (yeast) [Source:HGNC Symbol;Acc:HGNC:2183]
OrganismEquus caballus (horse)
Synonym(s)chs1, coh1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.51e3
  • 3.51e3
  • 3.68e3
84.78371
  • 84.78371
  • 84.03955
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
3.73e3
  • 3.73e3
83.82387
  • 83.82387
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
3.76e3
  • 3.76e3
83.69346
  • 83.69346
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
6.53e3
  • 6.53e3
  • 7.25e3
71.67641
  • 71.67641
  • 68.55814
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
7.34e3
  • 7.34e3
68.18563
  • 68.18563
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
7.46e3
  • 7.46e3
67.64887
  • 67.64887
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
7.59e3
  • 7.59e3
67.07278
  • 67.07278
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.53e3
  • 8.53e3
  • 8.66e3
  • 1.07e4
  • 1.10e4
63.02641
  • 63.02641
  • 62.45418
  • 53.67667
  • 52.19408
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.89e3
  • 8.89e3
  • 9.44e3
61.44832
  • 61.44832
  • 59.07885
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.01e3
  • 9.01e3
  • 9.64e3
60.92909
  • 60.92909
  • 58.18983
AEIR
  • AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
9.54e3
  • 9.54e3
58.61214
  • 58.61214
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
9.70e3
  • 9.70e3
57.94162
  • 57.94162
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.78e3
  • 9.78e3
  • 1.04e4
57.60940
  • 57.60940
  • 54.90216
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
9.80e3
  • 9.80e3
57.51256
  • 57.51256
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
9.91e3
  • 9.91e3
57.04272
  • 57.04272
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
9.93e3
  • 9.93e3
56.94123
  • 56.94123
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
9.94e3
  • 9.94e3
56.87952
  • 56.87952
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
55.31097
  • 55.31097
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
54.54404
  • 54.54404
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
54.39381
  • 54.39381
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
52.44893
  • 52.44893
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
49.44173
  • 49.44173
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000019852 (VPS13B)
HGNCHGNC:2183 (VPS13B)
Uniprot/SPTREMBLF7BYW6, F7BYW6_HORSE

Do not show this banner again