Gene: HMGB3 - ENSECAG00000020596 - Equus caballus (horse)

General information

Ensembl ID	ENSECAG00000020596
Name	HMGB3
Description	high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]
Organism	Equus caballus (horse)
Synonym(s)	hmg2a, hmg4, mgc90319

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000922	embryo	[+] 1 stage UBERON:0000068embryo stage	656 656	97.16 97.16	AEIR AEIR
UBERON:0004345	trophectoderm	[+] 1 stage UBERON:0000068embryo stage	1.49e3 1.49e3	93.54 93.54	AEIR AEIR
UBERON:0000087	inner cell mass	[+] 1 stage UBERON:0000068embryo stage	1.74e3 1.74e3	92.44 92.44	AEIR AEIR
UBERON:0002371	bone marrow	[+] 1 stage UBERON:0018241prime adult stage	2.09e3 2.09e3	90.92 90.92	AEIR AEIR
UBERON:0000473	testis	[+] 4 stages UBERON:0000112sexually immature stage UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle UBERON:0018241prime adult stage	2.83e3 2.83e3 7.23e3 7.70e3 7.76e3	87.72 87.72 68.65 66.63 66.34	AEIR AEIR AEIR AEIR AEIR
UBERON:0001295	endometrium	[+] 1 stage UBERON:0018241prime adult stage	3.14e3 3.14e3	86.39 86.39	AEIR AEIR
UBERON:0000082	adult mammalian kidney	[+] 1 stage UBERON:0018241prime adult stage	3.74e3 3.74e3	83.76 83.76	AEIR AEIR
UBERON:0000088	trophoblast	[+] 1 stage UBERON:0000068embryo stage	4.42e3 4.42e3	80.83 80.83	AEIR AEIR
UBERON:0000451	prefrontal cortex	[+] 1 stage UBERON:0018241prime adult stage	5.50e3 5.50e3	76.17 76.17	AEIR AEIR
UBERON:0002298	brainstem	[+] 1 stage UBERON:0000112sexually immature stage	5.65e3 5.65e3	75.49 75.49	AEIR AEIR
UBERON:0001371	gluteus medius	[+] 2 stages UBERON:0018241prime adult stage UBERON:0000112sexually immature stage	5.83e3 5.83e3 6.40e3	74.74 74.74 72.23	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000104life cycle	6.12e3 6.12e3	73.47 73.47	AEIR AEIR
UBERON:0002031	epithelium of bronchus	[+] 1 stage UBERON:0018241prime adult stage	6.78e3 6.78e3	70.59 70.59	AEIR AEIR
UBERON:0000178	blood	[+] 2 stages UBERON:0000112sexually immature stage UBERON:0018241prime adult stage	7.09e3 7.09e3 7.71e3	69.25 69.25 66.57	AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 2 stages UBERON:0000112sexually immature stage UBERON:0018241prime adult stage	7.52e3 7.52e3 8.02e3	67.41 67.41 65.23	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 2 stages UBERON:0007222late adult stage UBERON:0018241prime adult stage	8.19e3 8.19e3 8.27e3	64.48 64.48 64.12	AEIR AEIR AEIR
UBERON:0002018	synovial membrane of synovial joint	[+] 1 stage UBERON:0018241prime adult stage	8.51e3 8.51e3	63.11 63.11	AEIR AEIR
UBERON:0001509	triceps brachii	[+] 1 stage UBERON:0018241prime adult stage	8.67e3 8.67e3	62.39 62.39	AEIR AEIR
UBERON:0002037	cerebellum	[+] 2 stages UBERON:0000112sexually immature stage UBERON:0018241prime adult stage	8.74e3 8.74e3 1.04e4	62.10 62.10 54.92	AEIR AEIR AEIR
UBERON:0007106	chorionic villus	[+] 1 stage UBERON:0000113post-juvenile adult stage	9.30e3 9.30e3	59.67 59.67	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0018241prime adult stage	9.53e3 9.53e3	58.68 58.68	AEIR AEIR
UBERON:0010996	articular cartilage of joint	[+] 1 stage UBERON:0018241prime adult stage	1.04e4 1.04e4	54.72 54.72	AEIR AEIR
UBERON:0004804	oviduct epithelium	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.12e4 1.12e4	51.43 51.43	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Cross-references

Ensembl	ENSECAG00000020596 (HMGB3)
HGNC	HGNC:5004 (HMGB3)
Uniprot/SPTREMBL	F6UVT4, F6UVT4_HORSE