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E. caballus Gene: TRIM71 - ENSECAG00000020845 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000020845
NameTRIM71
Descriptiontripartite motif containing 71, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:32669]
OrganismEquus caballus (horse)
Synonym(s)lin-41, lin41
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.90e3
  • 1.90e3
91.77
  • 91.77
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
2.56e3
  • 2.56e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.58e3
  • 2.58e3
  • 8.58e3
88.81
  • 88.81
  • 62.80
AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
7.47e3
  • 7.47e3
67.60
  • 67.60
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
8.70e3
  • 8.70e3
62.28
  • 62.28
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
9.19e3
  • 9.19e3
60.16
  • 60.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.88e3
  • 9.88e3
  • 1.21e4
  • 1.47e4
  • 1.59e4
57.16
  • 57.16
  • 47.34
  • 36.34
  • 31.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
52.20
  • 52.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
28.84
  • 28.84
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
1.74e4
  • 1.74e4
24.76
  • 24.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSECAG00000020845.

Cross-references

EnsemblENSECAG00000020845 (TRIM71)
HGNCHGNC:32669 (TRIM71)
Uniprot/SPTREMBLF6T413, F6T413_HORSE

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