E. caballus Gene: VPS13A - ENSECAG00000020865 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000020865
NameVPS13A
Descriptionvacuolar protein sorting 13 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:1908]
OrganismEquus caballus (horse)
Synonym(s)chac, kiaa0986

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
2.02e3
  • 2.02e3
91.26474
  • 91.26474
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.25e3
  • 2.25e3
  • 3.21e3
90.23884
  • 90.23884
  • 86.08050
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
2.69e3
  • 2.69e3
  • 2.81e3
88.34194
  • 88.34194
  • 87.82595
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.95e3
  • 2.95e3
  • 3.70e3
87.21430
  • 87.21430
  • 83.93846
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
3.41e3
  • 3.41e3
85.20939
  • 85.20939
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
4.36e3
  • 4.36e3
81.10435
  • 81.10435
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
4.43e3
  • 4.43e3
  • 6.73e3
80.79342
  • 80.79342
  • 70.82660
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
5.04e3
  • 5.04e3
  • 5.47e3
  • 9.16e3
  • 1.35e4
78.15848
  • 78.15848
  • 76.29817
  • 60.29267
  • 41.47634
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
5.75e3
  • 5.75e3
75.04576
  • 75.04576
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
5.95e3
  • 5.95e3
74.19122
  • 74.19122
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
6.24e3
  • 6.24e3
72.94848
  • 72.94848
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
7.53e3
  • 7.53e3
67.33712
  • 67.33712
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.91e3
  • 7.91e3
65.70829
  • 65.70829
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
8.48e3
  • 8.48e3
63.22657
  • 63.22657
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
  • 9.28e3
62.18762
  • 62.18762
  • 59.77386
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
9.00e3
  • 9.00e3
60.96968
  • 60.96968
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
9.14e3
  • 9.14e3
60.34506
  • 60.34506
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.00e4
  • 1.00e4
56.55332
  • 56.55332
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.08e4
  • 1.08e4
53.08266
  • 53.08266
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
51.16572
  • 51.16572
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
48.87457
  • 48.87457
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
47.79538
  • 47.79538
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000020865 (VPS13A)
HGNCHGNC:1908 (VPS13A)
Uniprot/SPTREMBLF6RNH9, F6RNH9_HORSE

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