E. caballus Gene: SH3TC1 - ENSECAG00000020879 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000020879
NameSH3TC1
DescriptionSH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
OrganismEquus caballus (horse)
Synonym(s)flj20356
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
3.67e3
  • 3.67e3
84.11
  • 84.11
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
6.43e3
  • 6.43e3
  • 6.61e3
72.14
  • 72.14
  • 71.36
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
7.35e3
  • 7.35e3
68.16
  • 68.16
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
7.76e3
  • 7.76e3
66.37
  • 66.37
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
7.98e3
  • 7.98e3
65.43
  • 65.43
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
9.25e3
  • 9.25e3
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
55.67
  • 55.67
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.04e4
  • 1.04e4
55.10
  • 55.10
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
53.06
  • 53.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
  • 1.32e4
  • 1.47e4
  • 1.56e4
52.35
  • 52.35
  • 42.77
  • 36.26
  • 32.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.21e4
  • 1.21e4
  • 1.30e4
47.42
  • 47.42
  • 43.80
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
47.01
  • 47.01
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
46.78
  • 46.78
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.23e4
  • 1.23e4
  • 1.25e4
46.64
  • 46.64
  • 45.97
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
46.15
  • 46.15
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
44.07
  • 44.07
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
41.27
  • 41.27
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.42e4
  • 1.42e4
  • 1.56e4
38.45
  • 38.45
  • 32.20
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
35.91
  • 35.91
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
1.52e4
  • 1.52e4
34.12
  • 34.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSECAG00000020879.

Cross-references

EnsemblENSECAG00000020879 (SH3TC1)
HGNCHGNC:26009 (SH3TC1)
Uniprot/SPTREMBLF6VPF5, F6VPF5_HORSE

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