E. caballus Gene: COL6A3 - ENSECAG00000020887 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000020887
NameCOL6A3
Descriptioncollagen, type VI, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2213]
OrganismEquus caballus (horse)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
120
  • 120
99.48207
  • 99.48207
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
586
  • 586
97.46402
  • 97.46402
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.42e3
  • 1.42e3
93.84803
  • 93.84803
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.62e3
  • 1.62e3
92.96899
  • 92.96899
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
3.32e3
  • 3.32e3
85.59058
  • 85.59058
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
4.04e3
  • 4.04e3
82.46120
  • 82.46120
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
5.71e3
  • 5.71e3
75.22097
  • 75.22097
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.02e3
  • 6.02e3
  • 7.00e3
73.91681
  • 73.91681
  • 69.66466
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
6.25e3
  • 6.25e3
72.91629
  • 72.91629
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
6.44e3
  • 6.44e3
72.06384
  • 72.06384
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.11e3
  • 7.11e3
  • 7.30e3
  • 9.24e3
  • 1.20e4
69.17231
  • 69.17231
  • 68.33135
  • 59.93408
  • 47.90875
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
7.47e3
  • 7.47e3
  • 8.26e3
67.62723
  • 67.62723
  • 64.18437
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
7.98e3
  • 7.98e3
65.39814
  • 65.39814
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
  • 1.27e4
49.80214
  • 49.80214
  • 44.77165
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
46.26088
  • 46.26088
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
46.05521
  • 46.05521
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
45.94730
  • 45.94730
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.26e4
  • 1.26e4
  • 1.37e4
45.34966
  • 45.34966
  • 40.53702
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
38.46160
  • 38.46160
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000020887 (COL6A3)
HGNCHGNC:2213 (COL6A3)
Uniprot/SPTREMBLF6QAT0, F6QAT0_HORSE, F6R735, F6R735_HORSE

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