E. caballus Gene: COL11A1 - ENSECAG00000021205 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000021205
NameCOL11A1
Descriptioncollagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
OrganismEquus caballus (horse)
Synonym(s)co11a1, coll6, stl2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
189
  • 189
99.18441
  • 99.18441
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
754
  • 754
96.73379
  • 96.73379
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
2.25e3
  • 2.25e3
90.22574
  • 90.22574
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
9.05e3
  • 9.05e3
60.77044
  • 60.77044
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
9.16e3
  • 9.16e3
60.29466
  • 60.29466
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.06e4
  • 1.06e4
53.91820
  • 53.91820
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
52.43137
  • 52.43137
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.32e4
51.93243
  • 51.93243
  • 42.62480
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.20e4
  • 1.20e4
47.94436
  • 47.94436
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
46.86867
  • 46.86867
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.29e4
  • 1.29e4
  • 1.69e4
44.16351
  • 44.16351
  • 26.77681
AEIR
  • AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.32e4
  • 1.32e4
42.67854
  • 42.67854
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
  • 1.41e4
38.94505
  • 38.94505
  • 38.80709
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
38.63087
  • 38.63087
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
36.65984
  • 36.65984
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
34.13952
  • 34.13952
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 1.91e4
32.15748
  • 32.15748
  • 17.27024
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
20.42850
  • 20.42850
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000021205 (COL11A1)
HGNCHGNC:2186 (COL11A1)
Uniprot/SPTREMBLF6U661, F6U661_HORSE, F6VAW6, F6VAW6_HORSE, F6VBF7, F6VBF7_HORSE

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