E. caballus Gene: SPTLC2 - ENSECAG00000021294 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000021294
NameSPTLC2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:HGNC:11278]
OrganismEquus caballus (horse)
Synonym(s)hlcb2a, kiaa0526, lcb2, lcb2a
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.52e3
  • 1.52e3
93.41
  • 93.41
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.76e3
  • 1.76e3
92.39
  • 92.39
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.83e3
  • 1.83e3
  • 2.19e3
92.06
  • 92.06
  • 90.50
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
2.44e3
  • 2.44e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
3.17e3
  • 3.17e3
  • 4.19e3
  • 4.40e3
  • 4.99e3
86.27
  • 86.27
  • 81.84
  • 80.92
  • 78.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
3.20e3
  • 3.20e3
86.12
  • 86.12
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
3.42e3
  • 3.42e3
85.19
  • 85.19
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
3.61e3
  • 3.61e3
84.34
  • 84.34
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
4.49e3
  • 4.49e3
80.53
  • 80.53
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.80e3
  • 4.80e3
  • 5.68e3
79.20
  • 79.20
  • 75.39
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
5.23e3
  • 5.23e3
77.34
  • 77.34
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
5.42e3
  • 5.42e3
76.52
  • 76.52
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
5.42e3
  • 5.42e3
76.49
  • 76.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.43e3
  • 5.43e3
76.44
  • 76.44
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.46e3
  • 5.46e3
76.35
  • 76.35
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
5.63e3
  • 5.63e3
75.59
  • 75.59
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.88e3
  • 5.88e3
74.52
  • 74.52
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.90e3
  • 5.90e3
  • 5.97e3
74.44
  • 74.44
  • 74.12
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
6.38e3
  • 6.38e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
7.21e3
  • 7.21e3
68.76
  • 68.76
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
7.53e3
  • 7.53e3
  • 8.36e3
67.37
  • 67.37
  • 63.76
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
8.42e3
  • 8.42e3
63.51
  • 63.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.51e3
  • 8.51e3
  • 8.71e3
63.13
  • 63.13
  • 62.22
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSECAG00000021294.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000021294.

Cross-references

EnsemblENSECAG00000021294 (SPTLC2)
HGNCHGNC:11278 (SPTLC2)
Uniprot/SPTREMBLF6T8N8, F6T8N8_HORSE

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