E. caballus Gene: CCHCR1 - ENSECAG00000021619 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000021619
NameCCHCR1
Descriptioncoiled-coil alpha-helical rod protein 1 [Source:HGNC Symbol;Acc:HGNC:13930]
OrganismEquus caballus (horse)
Synonym(s)c6orf18, hcr

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.27e3
  • 1.27e3
  • 1.44e3
  • 1.57e3
  • 5.66e3
94.48
  • 94.48
  • 93.74
  • 93.19
  • 75.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
4.18e3
  • 4.18e3
81.88
  • 81.88
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
6.42e3
  • 6.42e3
  • 7.96e3
72.18
  • 72.18
  • 65.49
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
6.67e3
  • 6.67e3
  • 7.31e3
71.06
  • 71.06
  • 68.29
AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
6.82e3
  • 6.82e3
70.43
  • 70.43
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
7.33e3
  • 7.33e3
68.20
  • 68.20
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
7.99e3
  • 7.99e3
65.34
  • 65.34
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
8.18e3
  • 8.18e3
64.51
  • 64.51
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
9.00e3
  • 9.00e3
60.97
  • 60.97
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
9.04e3
  • 9.04e3
60.79
  • 60.79
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.35e3
  • 9.35e3
  • 9.63e3
59.44
  • 59.44
  • 58.22
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
9.37e3
  • 9.37e3
59.37
  • 59.37
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
9.57e3
  • 9.57e3
58.48
  • 58.48
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.90e3
  • 9.90e3
  • 1.00e4
57.06
  • 57.06
  • 56.44
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.94e3
  • 9.94e3
56.90
  • 56.90
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.05e4
  • 1.05e4
  • 1.10e4
54.52
  • 54.52
  • 52.19
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
53.52
  • 53.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
52.87
  • 52.87
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.16e4
  • 1.16e4
49.84
  • 49.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000021619 (CCHCR1)
HGNCHGNC:13930 (CCHCR1)
Uniprot/SPTREMBLF6Y5U0, F6Y5U0_HORSE

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