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E. caballus Gene: PCMTD1 - ENSECAG00000022204 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000022204
NamePCMTD1
Descriptionprotein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30483]
OrganismEquus caballus (horse)
Synonym(s)flj10883
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
827
  • 827
96.42
  • 96.42
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
861
  • 861
  • 1.19e3
96.27
  • 96.27
  • 94.86
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.56e3
  • 1.56e3
  • 1.75e3
93.24
  • 93.24
  • 92.40
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.65e3
  • 1.65e3
  • 1.75e3
92.85
  • 92.85
  • 92.40
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.76e3
  • 1.76e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.82e3
  • 1.82e3
92.12
  • 92.12
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.93e3
  • 1.93e3
91.65
  • 91.65
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.97e3
  • 1.97e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
2.01e3
  • 2.01e3
91.30
  • 91.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
2.36e3
  • 2.36e3
89.78
  • 89.78
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
2.43e3
  • 2.43e3
  • 3.47e3
89.48
  • 89.48
  • 84.97
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
2.86e3
  • 2.86e3
87.61
  • 87.61
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
3.00e3
  • 3.00e3
87.00
  • 87.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
3.62e3
  • 3.62e3
  • 5.43e3
  • 6.48e3
  • 8.86e3
84.30
  • 84.30
  • 76.47
  • 71.91
  • 61.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.77e3
  • 3.77e3
  • 4.96e3
83.67
  • 83.67
  • 78.50
AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
4.06e3
  • 4.06e3
82.41
  • 82.41
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
4.12e3
  • 4.12e3
82.16
  • 82.16
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
4.67e3
  • 4.67e3
79.76
  • 79.76
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
4.76e3
  • 4.76e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.06e3
  • 5.06e3
78.08
  • 78.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
5.60e3
  • 5.60e3
75.74
  • 75.74
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
5.99e3
  • 5.99e3
74.02
  • 74.02
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.20e3
  • 6.20e3
73.13
  • 73.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSECAG00000022204.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSECAG00000022204.

Cross-references

EnsemblENSECAG00000022204 (PCMTD1)
HGNCHGNC:30483 (PCMTD1)
Uniprot/SPTREMBLF6WHD4, F6WHD4_HORSE

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