E. caballus Gene: COL2A1 - ENSECAG00000022313 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000022313
NameCOL2A1
Descriptioncollagen, type II, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2200]
OrganismEquus caballus (horse)
Synonym(s)aom, sedc, stl1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
107
  • 107
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
159
  • 159
99.32
  • 99.32
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
6.09e3
  • 6.09e3
73.61
  • 73.61
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
6.89e3
  • 6.89e3
70.12
  • 70.12
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
1.00e4
  • 1.00e4
  • 1.43e4
  • 1.49e4
  • 1.54e4
56.54
  • 56.54
  • 37.87
  • 35.27
  • 33.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.17e4
  • 1.17e4
  • 1.30e4
49.14
  • 49.14
  • 43.69
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
44.92
  • 44.92
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
40.04
  • 40.04
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
38.93
  • 38.93
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.45e4
  • 1.45e4
  • 1.57e4
37.27
  • 37.27
  • 31.71
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
37.00
  • 37.00
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
36.76
  • 36.76
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.52e4
  • 1.52e4
34.21
  • 34.21
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
29.42
  • 29.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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