E. caballus Gene: SMDT1 - ENSECAG00000022508 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000022508
NameSMDT1
Descriptionsingle-pass membrane protein with aspartate-rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
OrganismEquus caballus (horse)
Synonym(s)c22orf32, dddd, dj186o1.1, emre

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
706
  • 706
  • 924
96.94
  • 96.94
  • 96.00
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
772
  • 772
  • 924
96.66
  • 96.66
  • 96.00
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
779
  • 779
96.63
  • 96.63
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
837
  • 837
96.38
  • 96.38
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
840
  • 840
  • 993
96.36
  • 96.36
  • 95.70
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
910
  • 910
96.06
  • 96.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
942
  • 942
  • 1.07e3
  • 1.13e3
  • 1.93e3
95.92
  • 95.92
  • 95.35
  • 95.11
  • 91.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
992
  • 992
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
996
  • 996
95.68
  • 95.68
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.01e3
  • 1.01e3
95.62
  • 95.62
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.19e3
  • 1.19e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.25e3
  • 1.25e3
94.56
  • 94.56
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.30e3
  • 1.30e3
94.37
  • 94.37
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.44e3
  • 1.44e3
93.76
  • 93.76
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.50e3
  • 1.50e3
93.50
  • 93.50
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.60e3
  • 1.60e3
93.08
  • 93.08
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.65e3
  • 1.65e3
92.86
  • 92.86
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.83e3
  • 1.83e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
2.09e3
  • 2.09e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.22e3
  • 2.22e3
  • 2.49e3
90.37
  • 90.37
  • 89.18
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
2.69e3
  • 2.69e3
88.35
  • 88.35
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
3.07e3
  • 3.07e3
  • 3.23e3
86.68
  • 86.68
  • 85.99
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
6.42e3
  • 6.42e3
72.16
  • 72.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000022508 (SMDT1)
HGNCHGNC:25055 (SMDT1)
Uniprot/SPTREMBLF7BCC8, F7BCC8_HORSE

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