E. caballus Gene: PDLIM4 - ENSECAG00000024273 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000024273
NamePDLIM4
DescriptionPDZ and LIM domain 4 [Source:HGNC Symbol;Acc:HGNC:16501]
OrganismEquus caballus (horse)
Synonym(s)ril

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.96e3
  • 1.96e3
91.52
  • 91.52
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
2.06e3
  • 2.06e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
2.46e3
  • 2.46e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
3.34e3
  • 3.34e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
3.51e3
  • 3.51e3
84.78
  • 84.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
3.89e3
  • 3.89e3
83.15
  • 83.15
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
4.90e3
  • 4.90e3
  • 5.12e3
78.74
  • 78.74
  • 77.78
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.96e3
  • 5.96e3
  • 9.36e3
  • 1.20e4
  • 1.24e4
74.17
  • 74.17
  • 59.42
  • 47.80
  • 46.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
7.05e3
  • 7.05e3
  • 7.53e3
69.44
  • 69.44
  • 67.34
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.71e3
  • 7.71e3
66.58
  • 66.58
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
7.95e3
  • 7.95e3
65.52
  • 65.52
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
8.36e3
  • 8.36e3
63.76
  • 63.76
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
9.05e3
  • 9.05e3
60.77
  • 60.77
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
9.14e3
  • 9.14e3
  • 9.99e3
60.34
  • 60.34
  • 56.68
AEIR
  • AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
9.59e3
  • 9.59e3
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.71e3
  • 9.71e3
  • 1.02e4
57.90
  • 57.90
  • 55.66
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.05e4
  • 1.05e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
54.37
  • 54.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
52.06
  • 52.06
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
51.80
  • 51.80
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
  • 1.18e4
49.54
  • 49.54
  • 48.61
AEIR
  • AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.65e4
  • 1.65e4
28.52
  • 28.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000024273 (PDLIM4)
HGNCHGNC:16501 (PDLIM4)
Uniprot/SPTREMBLF6YAU3, F6YAU3_HORSE

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