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E. caballus Gene: PTPN22 - ENSECAG00000024298 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000024298
NamePTPN22
Descriptionprotein tyrosine phosphatase, non-receptor type 22 (lymphoid) [Source:HGNC Symbol;Acc:HGNC:9652]
OrganismEquus caballus (horse)
Synonym(s)lyp, lyp1, lyp2, ptpn8
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.91e3
  • 3.91e3
  • 4.15e3
83.06
  • 83.06
  • 82.02
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
4.36e3
  • 4.36e3
81.12
  • 81.12
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.76e3
  • 5.76e3
75.01
  • 75.01
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
8.35e3
  • 8.35e3
63.79
  • 63.79
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
8.59e3
  • 8.59e3
62.75
  • 62.75
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
9.54e3
  • 9.54e3
58.66
  • 58.66
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
9.96e3
  • 9.96e3
  • 1.05e4
56.81
  • 56.81
  • 54.61
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
  • 1.08e4
  • 1.29e4
  • 1.37e4
53.82
  • 53.82
  • 53.03
  • 44.20
  • 40.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.07e4
  • 1.07e4
  • 1.12e4
53.69
  • 53.69
  • 51.51
AEIR
  • AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
53.14
  • 53.14
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
  • 1.13e4
51.62
  • 51.62
  • 50.92
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
49.11
  • 49.11
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
48.32
  • 48.32
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
47.89
  • 47.89
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
46.97
  • 46.97
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
  • 1.33e4
45.93
  • 45.93
  • 42.12
AEIR
  • AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
45.91
  • 45.91
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
37.92
  • 37.92
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.57e4
  • 1.57e4
32.12
  • 32.12
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
27.65
  • 27.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSECAG00000024298.

Cross-references

EnsemblENSECAG00000024298 (PTPN22)
HGNCHGNC:9652 (PTPN22)
Uniprot/SPTREMBLF6XFC9, F6XFC9_HORSE

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