E. caballus Gene: COL1A2 - ENSECAG00000024740 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000024740
NameCOL1A2
Descriptioncollagen, type I, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2198]
OrganismEquus caballus (horse)
Synonym(s)oi4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
2.00
  • 2.00
100.00
  • 100.00
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
99.5
  • 99.5
99.57
  • 99.57
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
228
  • 228
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
239
  • 239
98.97
  • 98.97
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
251
  • 251
98.92
  • 98.92
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
263
  • 263
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
422
  • 422
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.55e3
  • 1.55e3
  • 1.56e3
  • 3.93e3
  • 7.49e3
93.29
  • 93.29
  • 93.22
  • 82.96
  • 67.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.97e3
  • 1.97e3
91.48
  • 91.48
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.54e3
  • 2.54e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.21e3
  • 4.21e3
  • 4.55e3
81.73
  • 81.73
  • 80.27
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
4.24e3
  • 4.24e3
81.61
  • 81.61
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.34e3
  • 4.34e3
  • 5.88e3
81.16
  • 81.16
  • 74.51
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.75e3
  • 5.75e3
  • 6.81e3
75.06
  • 75.06
  • 70.45
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.88e3
  • 5.88e3
  • 6.21e3
74.51
  • 74.51
  • 73.07
AEIR
  • AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
6.50e3
  • 6.50e3
71.83
  • 71.83
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
6.78e3
  • 6.78e3
70.60
  • 70.60
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
7.23e3
  • 7.23e3
68.67
  • 68.67
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
7.85e3
  • 7.85e3
65.95
  • 65.95
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.60e3
  • 8.60e3
62.72
  • 62.72
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
1.09e4
  • 1.09e4
52.82
  • 52.82
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.37e4
  • 1.37e4
40.72
  • 40.72
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
23.26
  • 23.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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