We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

E. caballus Gene: ABCF1 - ENSECAG00000024907 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000024907
NameABCF1
DescriptionATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70]
OrganismEquus caballus (horse)
Synonym(s)abc50, est123147
Orthologs(s)24 orthologs
Paralog(s)27 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.94e3
  • 1.94e3
  • 2.40e3
  • 2.62e3
  • 3.39e3
91.59
  • 91.59
  • 89.60
  • 88.63
  • 85.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
2.35e3
  • 2.35e3
89.81
  • 89.81
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
2.38e3
  • 2.38e3
89.69
  • 89.69
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
2.48e3
  • 2.48e3
89.25
  • 89.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
2.57e3
  • 2.57e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
2.59e3
  • 2.59e3
88.77
  • 88.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.90e3
  • 2.90e3
  • 2.94e3
87.44
  • 87.44
  • 87.24
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
3.00e3
  • 3.00e3
  • 3.13e3
87.00
  • 87.00
  • 86.45
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
3.24e3
  • 3.24e3
85.97
  • 85.97
AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
3.40e3
  • 3.40e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.45e3
  • 3.45e3
  • 3.46e3
85.06
  • 85.06
  • 85.01
AEIR
  • AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
3.46e3
  • 3.46e3
84.99
  • 84.99
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
3.83e3
  • 3.83e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
3.98e3
  • 3.98e3
82.73
  • 82.73
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
4.14e3
  • 4.14e3
82.05
  • 82.05
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
4.28e3
  • 4.28e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
4.34e3
  • 4.34e3
81.21
  • 81.21
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
4.37e3
  • 4.37e3
81.07
  • 81.07
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
5.16e3
  • 5.16e3
  • 6.42e3
77.65
  • 77.65
  • 72.18
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.20e3
  • 5.20e3
77.46
  • 77.46
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
8.29e3
  • 8.29e3
64.06
  • 64.06
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
8.65e3
  • 8.65e3
  • 8.91e3
62.51
  • 62.51
  • 61.38
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
9.92e3
  • 9.92e3
56.99
  • 56.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSECAG00000024907.

Paralogs (same species)

Cross-references

EnsemblENSECAG00000024907 (ABCF1)
HGNCHGNC:70 (ABCF1)
Uniprot/SPTREMBLF6PJ40, F6PJ40_HORSE, F6R0H9, F6R0H9_HORSE

Do not show this banner again