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E. caballus Gene: PPFIA1 - ENSECAG00000026889 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000026889
NamePPFIA1
Descriptionprotein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
OrganismEquus caballus (horse)
Synonym(s)lip.1, liprin
Orthologs(s)23 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
231
  • 231
  • 2.22e3
99.00
  • 99.00
  • 90.39
AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
302
  • 302
98.70
  • 98.70
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
317
  • 317
98.63
  • 98.63
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
395
  • 395
98.29
  • 98.29
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
596
  • 596
  • 659
97.42
  • 97.42
  • 97.15
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
730
  • 730
  • 989
  • 1.51e3
  • 1.64e3
96.84
  • 96.84
  • 95.71
  • 93.45
  • 92.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
758
  • 758
96.72
  • 96.72
AEIR
  • AEIR
UBERON:0002018synovial membrane of synovial joint
  • UBERON:0018241prime adult stage
808
  • 808
96.50
  • 96.50
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
911
  • 911
96.06
  • 96.06
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
931
  • 931
95.97
  • 95.97
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.03e3
  • 1.03e3
95.52
  • 95.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.15e3
  • 1.15e3
95.01
  • 95.01
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.21e3
  • 1.21e3
94.75
  • 94.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.36e3
  • 1.36e3
  • 1.70e3
94.13
  • 94.13
  • 92.63
AEIR
  • AEIR
  • AEIR
UBERON:0007106chorionic villus
  • UBERON:0000113post-juvenile adult stage
1.41e3
  • 1.41e3
93.88
  • 93.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.45e3
  • 1.45e3
93.72
  • 93.72
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
1.50e3
  • 1.50e3
93.52
  • 93.52
AEIR
  • AEIR
UBERON:0002031epithelium of bronchus
  • UBERON:0018241prime adult stage
1.79e3
  • 1.79e3
92.24
  • 92.24
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.92e3
  • 1.92e3
  • 2.67e3
91.68
  • 91.68
  • 88.41
AEIR
  • AEIR
  • AEIR
UBERON:0000088trophoblast
  • UBERON:0000068embryo stage
3.38e3
  • 3.38e3
85.36
  • 85.36
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.25e3
  • 5.25e3
77.26
  • 77.26
AEIR
  • AEIR
UBERON:0010996articular cartilage of joint
  • UBERON:0018241prime adult stage
7.15e3
  • 7.15e3
69.02
  • 69.02
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.57e3
  • 8.57e3
  • 8.95e3
62.83
  • 62.83
  • 61.21
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000113post-juvenile adult stage
8.73e3
  • 8.73e3
62.15
  • 62.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSECAG00000026889.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Bilateria3 genesCompare expression

Paralogy information comes from OMA : ENSECAG00000026889.

Cross-references

EnsemblENSECAG00000026889 (PPFIA1)
HGNCHGNC:9245 (PPFIA1)
Uniprot/SPTREMBLH9H035, H9H035_HORSE

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