E. caballus Gene: SNORD116 - ENSECAG00000027086 - Equus caballus (horse)

General information

Ensembl IDENSECAG00000027086
NameSNORD116
DescriptionSmall nucleolar RNA SNORD116 [Source:RFAM;Acc:RF00108]
OrganismEquus caballus (horse)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
742
  • 742
96.79
  • 96.79
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
6.59e3
  • 6.59e3
  • 1.07e4
71.41
  • 71.41
  • 53.46
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.19e4
  • 1.19e4
  • 1.45e4
48.55
  • 48.55
  • 37.23
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
24.17
  • 24.17
AEIR
  • AEIR
UBERON:0004345trophectoderm
  • UBERON:0000068embryo stage
1.84e4
  • 1.84e4
20.22
  • 20.22
AEIR
  • AEIR
UBERON:0000087inner cell mass
  • UBERON:0000068embryo stage
1.91e4
  • 1.91e4
16.95
  • 16.95
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
1.94e4
  • 1.94e4
15.80
  • 15.80
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • UBERON:0000113post-juvenile adult stage
2.00e4
  • 2.00e4
13.34
  • 13.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSECAG00000027086 (SNORD116)

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