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F. catus Gene: SLC6A1 - ENSFCAG00000004345 - Felis catus (cat)

General information

Ensembl IDENSFCAG00000004345
NameSLC6A1
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
OrganismFelis catus (cat)
Synonym(s)gabathg, gabatr, gat1
Orthologs(s)15 orthologs
Paralog(s)15 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
554
  • 554
97.17
  • 97.17
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
748
  • 748
96.17
  • 96.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000112sexually immature stage
2.65e3
  • 2.65e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
3.89e3
  • 3.89e3
80.05
  • 80.05
AEIR
  • AEIR
UBERON:0010230eyeball of camera-type eye
  • UBERON:0000112sexually immature stage
5.68e3
  • 5.68e3
70.87
  • 70.87
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
8.80e3
  • 8.80e3
54.87
  • 54.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
47.79
  • 47.79
AEIR
  • AEIR
UBERON:0008816embryonic head
  • UBERON:0000068embryo stage
1.05e4
  • 1.05e4
45.91
  • 45.91
AEIR
  • AEIR
UBERON:1000017tip of external ear
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
24.81
  • 24.81
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
22.34
  • 22.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
19.21
  • 19.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression

Orthology information comes from OMA : ENSFCAG00000004345.

Paralogs (same species)

Cross-references

EnsemblENSFCAG00000004345 (SLC6A1)
HGNCHGNC:11042 (SLC6A1)
EMBLAANG02152296
Uniprot/SPTREMBLM3W210, M3W210_FELCA

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