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F. catus Gene: VBP1 - ENSFCAG00000022037 - Felis catus (cat)

General information

Ensembl IDENSFCAG00000022037
NameVBP1
Descriptionvon Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12662]
OrganismFelis catus (cat)
Synonym(s)pfd3, pfdn3
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000112sexually immature stage
1.45e3
  • 1.45e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:0008816embryonic head
  • UBERON:0000068embryo stage
1.46e3
  • 1.46e3
92.52
  • 92.52
AEIR
  • AEIR
UBERON:0010230eyeball of camera-type eye
  • UBERON:0000112sexually immature stage
1.83e3
  • 1.83e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
2.20e3
  • 2.20e3
88.73
  • 88.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
3.11e3
  • 3.11e3
84.04
  • 84.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
3.34e3
  • 3.34e3
82.88
  • 82.88
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
4.23e3
  • 4.23e3
78.30
  • 78.30
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.50e3
  • 4.50e3
76.95
  • 76.95
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
4.63e3
  • 4.63e3
76.25
  • 76.25
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.15e3
  • 5.15e3
73.62
  • 73.62
AEIR
  • AEIR
UBERON:1000017tip of external ear
  • UBERON:0018241prime adult stage
6.54e3
  • 6.54e3
66.45
  • 66.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Mammalia13 species15 genesCompare expression
Amniota15 species17 genesCompare expression
Tetrapoda16 species18 genesCompare expression
Euteleostomi17 species19 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSFCAG00000022037.

Cross-references

EnsemblENSFCAG00000022037 (VBP1)
HGNCHGNC:12662 (VBP1)
EMBLAANG02064407, AANG02064408
Uniprot/SPTREMBLM3WX04, M3WX04_FELCA

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