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F. catus Gene: COL21A1 - ENSFCAG00000029537 - Felis catus (cat)

General information

Ensembl IDENSFCAG00000029537
NameCOL21A1
Descriptioncollagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
OrganismFelis catus (cat)
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0010230eyeball of camera-type eye
  • UBERON:0000112sexually immature stage
5.79e3
  • 5.79e3
70.33
  • 70.33
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
6.13e3
  • 6.13e3
68.59
  • 68.59
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
9.35e3
  • 9.35e3
52.07
  • 52.07
AEIR
  • AEIR
UBERON:0008816embryonic head
  • UBERON:0000068embryo stage
9.45e3
  • 9.45e3
51.55
  • 51.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
9.74e3
  • 9.74e3
50.08
  • 50.08
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
41.57
  • 41.57
AEIR
  • AEIR
UBERON:1000017tip of external ear
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
40.85
  • 40.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
40.38
  • 40.38
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
39.31
  • 39.31
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000112sexually immature stage
1.24e4
  • 1.24e4
36.46
  • 36.46
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
31.66
  • 31.66
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
30.87
  • 30.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria8 species8 genesCompare expression
Theria9 species9 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSFCAG00000029537.

Cross-references

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