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H. sapiens Gene: USH2A - ENSG00000042781 - Homo sapiens (human)

General information

Ensembl IDENSG00000042781
NameUSH2A
DescriptionUsher syndrome 2A (autosomal recessive, mild) [Source:HGNC Symbol;Acc:HGNC:12601]
OrganismHomo sapiens (human)
Synonym(s)dj1111a8.1, q5vvm9, q6s362, q9ns27, rp39, us2, ush2
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000087human adult stage (human)
  • UBERON:0034920infant stage
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
1.04e4
  • 1.04e4
  • 1.21e4
  • 2.03e4
  • 2.24e4
  • 2.41e4
  • 2.45e4
  • 2.75e4
81.17
  • 81.17
  • 78.05
  • 63.21
  • 59.28
  • 56.21
  • 55.51
  • 50.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • HsapDv:0000199fifth LMP month human stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000197third LMP month human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 2.11e4
  • 2.30e4
  • 2.36e4
  • 2.49e4
  • 2.78e4
  • 2.90e4
  • 2.96e4
77.33
  • 77.33
  • 61.77
  • 58.31
  • 57.18
  • 54.78
  • 49.60
  • 47.31
  • 46.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.60e4
  • 1.60e4
  • 1.62e4
  • 1.77e4
  • 1.82e4
  • 2.11e4
70.93
  • 70.93
  • 70.61
  • 67.85
  • 66.94
  • 61.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034920infant stage
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000089young adult stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000198fourth LMP month human stage (human)
1.91e4
  • 1.91e4
  • 2.34e4
  • 2.44e4
  • 2.47e4
  • 2.85e4
  • 2.97e4
  • 2.98e4
  • 3.25e4
65.25
  • 65.25
  • 57.53
  • 55.61
  • 55.17
  • 48.18
  • 46.03
  • 45.85
  • 41.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004534right testis
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.96e4
  • 1.96e4
  • 2.00e4
  • 2.32e4
  • 2.75e4
64.37
  • 64.37
  • 63.64
  • 57.83
  • 50.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.11e4
  • 2.11e4
  • 2.23e4
  • 2.32e4
61.67
  • 61.67
  • 59.47
  • 57.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004533left testis
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
2.13e4
  • 2.13e4
  • 2.26e4
  • 2.28e4
  • 2.32e4
  • 2.33e4
  • 2.46e4
61.33
  • 61.33
  • 59.01
  • 58.62
  • 57.93
  • 57.75
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
2.26e4
  • 2.26e4
  • 3.09e4
58.89
  • 58.89
  • 43.82
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
2.33e4
  • 2.33e4
  • 3.23e4
57.72
  • 57.72
  • 41.40
AEIR
  • AEIR
  • AEIR
UBERON:0001233right adrenal gland
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.36e4
  • 2.36e4
  • 3.01e4
57.07
  • 57.07
  • 45.37
AEIR
  • AEIR
  • AEIR
UBERON:0006631right atrium auricular region
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.42e4
  • 2.42e4
  • 2.46e4
  • 2.52e4
  • 2.54e4
56.00
  • 56.00
  • 55.35
  • 54.28
  • 53.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • UBERON:0000104life cycle
2.48e4
  • 2.48e4
  • 2.49e4
  • 2.54e4
  • 2.59e4
  • 2.93e4
54.91
  • 54.91
  • 54.76
  • 53.87
  • 52.99
  • 46.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000093human aged stage
2.49e4
  • 2.49e4
  • 2.76e4
54.73
  • 54.73
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.52e4
  • 2.52e4
  • 3.07e4
  • 3.21e4
54.32
  • 54.32
  • 44.18
  • 41.68
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000019sperm
  • HsapDv:0000088human early adulthood stage (human)
2.54e4
  • 2.54e4
53.92
  • 53.92
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.54e4
  • 2.54e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0035827right adrenal gland cortex
  • HsapDv:0000091human late adulthood stage (human)
2.56e4
  • 2.56e4
53.44
  • 53.44
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
2.65e4
  • 2.65e4
  • 2.70e4
51.83
  • 51.83
  • 51.01
AEIR
  • AEIR
  • AEIR
UBERON:0035825left adrenal gland cortex
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.66e4
  • 2.66e4
  • 2.86e4
51.75
  • 51.75
  • 48.11
AEIR
  • AEIR
  • AEIR
UBERON:0001234left adrenal gland
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
2.74e4
  • 2.74e4
  • 2.82e4
  • 2.83e4
50.24
  • 50.24
  • 48.88
  • 48.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003244epithelium of mammary gland
  • HsapDv:0000087human adult stage (human)
2.77e4
  • 2.77e4
49.70
  • 49.70
AEIR
  • AEIR
UBERON:0000955brain
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.79e4
  • 2.79e4
  • 2.94e4
  • 3.11e4
  • 3.18e4
49.34
  • 49.34
  • 46.70
  • 43.62
  • 42.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035833lower esophagus muscularis layer
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
3.01e4
  • 3.01e4
  • 3.03e4
  • 3.06e4
45.38
  • 45.38
  • 45.04
  • 44.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000091human late adulthood stage (human)
3.01e4
  • 3.01e4
  • 3.41e4
  • 3.44e4
  • 3.45e4
  • 3.64e4
45.29
  • 45.29
  • 38.02
  • 37.62
  • 37.30
  • 33.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.07e4
  • 3.07e4
  • 3.23e4
44.25
  • 44.25
  • 41.33
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Theria10 species10 genesCompare expression
Mammalia11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSG00000042781.

Cross-references

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