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H. sapiens Gene: SMC1B - ENSG00000077935 - Homo sapiens (human)

General information

Ensembl IDENSG00000077935
NameSMC1B
Descriptionstructural maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112]
OrganismHomo sapiens (human)
Synonym(s)bk268h5, smc1beta, smc1l2
Orthologs(s)17 orthologs
Paralog(s)334 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000197third LMP month human stage (human)
  • UBERON:0000111organogenesis stage
  • HsapDv:0000198fourth LMP month human stage (human)
1.58e3
  • 1.58e3
  • 2.94e3
  • 4.22e3
  • 9.43e3
  • 1.09e4
  • 1.73e4
  • 2.12e4
  • 2.59e4
  • 3.23e4
  • 3.24e4
  • 3.25e4
97.13
  • 97.13
  • 94.66
  • 92.34
  • 82.89
  • 80.18
  • 68.51
  • 61.53
  • 52.91
  • 41.35
  • 41.10
  • 41.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004534right testis
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
4.02e3
  • 4.02e3
  • 4.36e3
  • 5.05e3
  • 5.50e3
  • 6.84e3
92.70
  • 92.70
  • 92.09
  • 90.82
  • 90.01
  • 87.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004533left testis
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
5.35e3
  • 5.35e3
  • 5.55e3
  • 5.63e3
  • 5.74e3
  • 6.23e3
  • 7.51e3
90.29
  • 90.29
  • 89.92
  • 89.78
  • 89.58
  • 88.69
  • 86.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • HsapDv:0000199fifth LMP month human stage (human)
  • HsapDv:0000198fourth LMP month human stage (human)
  • HsapDv:0000197third LMP month human stage (human)
  • UBERON:0000104life cycle
  • UBERON:0000111organogenesis stage
1.09e4
  • 1.09e4
  • 1.32e4
  • 2.03e4
  • 3.07e4
  • 3.24e4
80.12
  • 80.12
  • 76.01
  • 63.22
  • 44.29
  • 41.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002336buccal mucosa cell
  • HsapDv:000009025-44 year-old human stage (human)
1.68e4
  • 1.68e4
69.55
  • 69.55
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.22e4
  • 2.22e4
  • 3.23e4
59.71
  • 59.71
  • 41.40
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000113post-juvenile adult stage
2.23e4
  • 2.23e4
59.59
  • 59.59
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0000113post-juvenile adult stage
2.25e4
  • 2.25e4
59.15
  • 59.15
AEIR
  • AEIR
UBERON:0003701calcaneal tendon
  • HsapDv:0000086adolescent stage (human)
2.29e4
  • 2.29e4
58.38
  • 58.38
AEIR
  • AEIR
UBERON:0001154vermiform appendix
  • UBERON:0000113post-juvenile adult stage
2.50e4
  • 2.50e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • UBERON:0000104life cycle
2.56e4
  • 2.56e4
  • 2.78e4
  • 2.81e4
  • 2.92e4
  • 3.23e4
53.59
  • 53.59
  • 49.61
  • 48.89
  • 46.94
  • 41.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
2.63e4
  • 2.63e4
  • 2.71e4
  • 3.07e4
52.19
  • 52.19
  • 50.87
  • 44.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
2.64e4
  • 2.64e4
  • 3.22e4
  • 3.22e4
52.11
  • 52.11
  • 41.52
  • 41.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000104life cycle
2.69e4
  • 2.69e4
  • 3.16e4
  • 3.16e4
51.11
  • 51.11
  • 42.71
  • 42.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014892skeletal muscle organ
  • HsapDv:0000087human adult stage (human)
2.76e4
  • 2.76e4
49.96
  • 49.96
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
2.80e4
  • 2.80e4
  • 3.20e4
  • 3.44e4
49.14
  • 49.14
  • 41.82
  • 37.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.95e4
  • 2.95e4
  • 2.99e4
  • 3.02e4
46.51
  • 46.51
  • 45.68
  • 45.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000996vagina
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
3.02e4
  • 3.02e4
  • 3.06e4
  • 3.12e4
  • 3.14e4
  • 3.16e4
45.22
  • 45.22
  • 44.44
  • 43.41
  • 42.98
  • 42.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.05e4
  • 3.05e4
  • 3.07e4
  • 3.13e4
44.58
  • 44.58
  • 44.31
  • 43.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001511skin of leg
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.09e4
  • 3.09e4
  • 3.10e4
43.82
  • 43.82
  • 43.65
AEIR
  • AEIR
  • AEIR
UBERON:0001323tibial nerve
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.25e4
  • 3.25e4
  • 3.33e4
40.93
  • 40.93
  • 39.57
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSG00000077935.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression
Eukaryota334 genesCompare expression

Paralogy information comes from OMA : ENSG00000077935.

Cross-references

CCDSCCDS43027 (CCDS43027.1), CCDS74876 (CCDS74876.1)
EnsemblENSG00000077935 (SMC1B)
HGNCHGNC:11112 (SMC1B)
OncoMXSMC1B (SMC1B)
Uniprot/SWISSPROTQ8NDV3, SMC1B_HUMAN

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