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H. sapiens Gene: LHX3 - ENSG00000107187 - Homo sapiens (human)

General information

Ensembl IDENSG00000107187
NameLHX3
DescriptionLIM homeobox 3 [Source:HGNC Symbol;Acc:HGNC:6595]
OrganismHomo sapiens (human)
Synonym(s)cphd3, lim3, m2-lhx3, q5tb39, q5tb40, q9nzb5, q9p0i8, q9p0i9
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000007pituitary gland
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
1.61e3
  • 1.61e3
  • 2.58e3
  • 3.70e3
  • 3.83e3
  • 4.91e3
  • 5.45e3
  • 6.02e3
  • 6.84e3
  • 8.77e3
97.08
  • 97.08
  • 95.32
  • 93.28
  • 93.05
  • 91.09
  • 90.11
  • 89.07
  • 87.59
  • 84.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.23e3
  • 3.23e3
  • 4.91e3
  • 5.17e3
  • 7.29e3
94.14
  • 94.14
  • 91.09
  • 90.62
  • 86.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000199fifth LMP month human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000200sixth LMP month human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
7.30e3
  • 7.30e3
  • 1.89e4
  • 2.01e4
  • 2.11e4
  • 2.50e4
  • 2.53e4
86.75
  • 86.75
  • 65.65
  • 63.55
  • 61.77
  • 54.69
  • 54.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
7.76e3
  • 7.76e3
  • 2.00e4
85.92
  • 85.92
  • 63.67
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000089young adult stage (human)
7.84e3
  • 7.84e3
  • 2.60e4
85.76
  • 85.76
  • 52.71
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
7.89e3
  • 7.89e3
  • 1.12e4
  • 2.52e4
  • 2.57e4
85.67
  • 85.67
  • 79.68
  • 54.26
  • 53.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001379vastus lateralis
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000093human aged stage
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
7.96e3
  • 7.96e3
  • 8.04e3
  • 1.55e4
  • 1.90e4
  • 2.03e4
  • 2.47e4
85.54
  • 85.54
  • 85.41
  • 71.90
  • 65.56
  • 63.20
  • 55.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
8.36e3
  • 8.36e3
  • 1.80e4
  • 3.13e4
  • 3.30e4
  • 3.72e4
  • 3.73e4
84.82
  • 84.82
  • 67.25
  • 43.14
  • 39.99
  • 32.47
  • 32.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
9.70e3
  • 9.70e3
  • 1.22e4
82.38
  • 82.38
  • 77.81
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
1.14e4
  • 1.14e4
  • 2.51e4
79.36
  • 79.36
  • 54.38
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000104life cycle
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.17e4
  • 1.17e4
  • 3.15e4
  • 3.18e4
  • 3.28e4
  • 3.33e4
  • 3.38e4
  • 3.91e4
78.83
  • 78.83
  • 42.81
  • 42.26
  • 40.44
  • 39.48
  • 38.59
  • 28.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003244epithelium of mammary gland
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.21e4
  • 1.21e4
  • 1.66e4
  • 1.72e4
  • 2.94e4
78.09
  • 78.09
  • 69.77
  • 68.70
  • 46.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • HsapDv:0000203ninth LMP month human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • UBERON:0000104life cycle
  • HsapDv:000007538th week post-fertilization and over human stage (human)
  • UBERON:0007220late embryonic stage
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
1.26e4
  • 1.26e4
  • 1.93e4
  • 2.00e4
  • 2.66e4
  • 2.79e4
  • 3.03e4
  • 3.84e4
  • 4.39e4
77.04
  • 77.04
  • 64.93
  • 63.67
  • 51.69
  • 49.26
  • 45.03
  • 30.20
  • 20.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
  • 2.29e4
  • 4.12e4
72.57
  • 72.57
  • 58.42
  • 25.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000104life cycle
  • HsapDv:0000093human aged stage
  • HsapDv:000009025-44 year-old human stage (human)
1.53e4
  • 1.53e4
  • 1.64e4
  • 1.86e4
72.22
  • 72.22
  • 70.18
  • 66.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
  • 1.87e4
  • 2.00e4
  • 2.01e4
  • 2.99e4
  • 4.30e4
71.57
  • 71.57
  • 66.08
  • 63.63
  • 63.45
  • 45.65
  • 21.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
  • 3.20e4
  • 3.70e4
  • 4.14e4
71.06
  • 71.06
  • 41.97
  • 32.78
  • 24.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002038substantia nigra
  • UBERON:0000104life cycle
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
1.61e4
  • 1.61e4
  • 2.42e4
  • 3.08e4
  • 3.92e4
  • 4.58e4
70.74
  • 70.74
  • 56.00
  • 44.06
  • 28.76
  • 16.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
  • 2.82e4
  • 4.06e4
68.33
  • 68.33
  • 48.74
  • 26.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003911choroid plexus epithelium
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
66.23
  • 66.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • HsapDv:00000856-12 year-old child stage (human)
  • HsapDv:0000086adolescent stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
1.90e4
  • 1.90e4
  • 2.01e4
  • 2.51e4
  • 3.10e4
  • 3.25e4
65.53
  • 65.53
  • 63.51
  • 54.48
  • 43.78
  • 40.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
1.92e4
  • 1.92e4
  • 3.96e4
65.08
  • 65.08
  • 28.12
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
2.15e4
  • 2.15e4
60.91
  • 60.91
AEIR
  • AEIR
UBERON:0001906subthalamic nucleus
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.20e4
  • 2.20e4
  • 2.28e4
  • 2.54e4
60.02
  • 60.02
  • 58.52
  • 53.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
2.21e4
  • 2.21e4
59.94
  • 59.94
AEIR
  • AEIR
UBERON:0002384connective tissue
  • UBERON:0000104life cycle
2.25e4
  • 2.25e4
59.17
  • 59.17
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
2.32e4
  • 2.32e4
57.93
  • 57.93
AEIR
  • AEIR
UBERON:0001891midbrain
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.39e4
  • 2.39e4
  • 2.46e4
56.65
  • 56.65
  • 55.40
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
2.46e4
  • 2.46e4
  • 3.24e4
  • 4.66e4
55.31
  • 55.31
  • 41.15
  • 15.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001872parietal lobe
  • HsapDv:000009025-44 year-old human stage (human)
2.47e4
  • 2.47e4
55.09
  • 55.09
AEIR
  • AEIR
UBERON:0000178blood
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000086adolescent stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.47e4
  • 2.47e4
  • 2.97e4
  • 3.03e4
  • 3.20e4
  • 3.42e4
  • 3.61e4
  • 3.61e4
  • 3.66e4
  • 3.79e4
55.08
  • 55.08
  • 46.07
  • 45.03
  • 41.82
  • 37.97
  • 34.49
  • 34.39
  • 33.56
  • 31.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000091human late adulthood stage (human)
2.48e4
  • 2.48e4
  • 3.22e4
  • 3.92e4
  • 4.03e4
  • 4.06e4
  • 4.53e4
55.04
  • 55.04
  • 41.62
  • 28.85
  • 26.76
  • 26.28
  • 17.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
2.50e4
  • 2.50e4
54.54
  • 54.54
AEIR
  • AEIR
UBERON:0001882nucleus accumbens
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.53e4
  • 2.53e4
  • 3.21e4
  • 3.28e4
  • 4.01e4
  • 4.02e4
54.14
  • 54.14
  • 41.78
  • 40.50
  • 27.25
  • 27.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
2.53e4
  • 2.53e4
  • 2.96e4
54.06
  • 54.06
  • 46.32
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000113post-juvenile adult stage
2.56e4
  • 2.56e4
  • 2.57e4
  • 2.99e4
53.55
  • 53.55
  • 53.33
  • 45.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:000009025-44 year-old human stage (human)
2.57e4
  • 2.57e4
  • 3.60e4
  • 4.41e4
  • 4.71e4
53.34
  • 53.34
  • 34.56
  • 19.96
  • 14.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003889fallopian tube
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.58e4
  • 2.58e4
  • 4.51e4
53.23
  • 53.23
  • 18.06
AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • HsapDv:000009465-79 year-old human stage (human)
2.60e4
  • 2.60e4
52.73
  • 52.73
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • UBERON:0000113post-juvenile adult stage
2.67e4
  • 2.67e4
  • 3.05e4
  • 3.12e4
  • 3.19e4
  • 3.81e4
51.54
  • 51.54
  • 44.71
  • 43.36
  • 42.00
  • 30.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.75e4
  • 2.75e4
  • 3.01e4
  • 3.24e4
50.15
  • 50.15
  • 45.26
  • 41.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.87e4
  • 2.87e4
47.90
  • 47.90
AEIR
  • AEIR
UBERON:0002728entorhinal cortex
  • HsapDv:000009465-79 year-old human stage (human)
  • UBERON:0000104life cycle
2.94e4
  • 2.94e4
  • 3.24e4
46.55
  • 46.55
  • 41.11
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000091human late adulthood stage (human)
2.98e4
  • 2.98e4
  • 3.97e4
  • 3.98e4
  • 4.17e4
45.89
  • 45.89
  • 27.86
  • 27.79
  • 24.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002250popliteal artery
  • HsapDv:0000092human middle aged stage (human)
2.99e4
  • 2.99e4
45.72
  • 45.72
AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
3.19e4
  • 3.19e4
  • 3.19e4
42.04
  • 42.04
  • 41.99
AEIR
  • AEIR
  • AEIR
UBERON:0007610tibial artery
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
3.68e4
  • 3.68e4
  • 3.78e4
  • 3.85e4
33.25
  • 33.25
  • 31.44
  • 30.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
3.84e4
  • 3.84e4
  • 4.10e4
30.21
  • 30.21
  • 25.48
AEIR
  • AEIR
  • AEIR
UBERON:0006469C1 segment of cervical spinal cord
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.85e4
  • 3.85e4
  • 4.03e4
30.11
  • 30.11
  • 26.76
AEIR
  • AEIR
  • AEIR
UBERON:0000996vagina
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
3.89e4
  • 3.89e4
  • 3.99e4
  • 4.20e4
  • 4.36e4
  • 4.63e4
29.30
  • 29.30
  • 27.58
  • 23.71
  • 20.87
  • 15.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035841esophagogastric junction muscularis propria
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
4.00e4
  • 4.00e4
  • 4.13e4
  • 4.22e4
27.43
  • 27.43
  • 24.95
  • 23.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001120left lobe of thyroid gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.19e4
  • 4.19e4
  • 4.38e4
23.97
  • 23.97
  • 20.55
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSG00000107187.

Cross-references

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