H. sapiens Gene: LHX3 - ENSG00000107187 - Homo sapiens (human)

General information

Ensembl IDENSG00000107187
NameLHX3
DescriptionLIM homeobox 3 [Source:HGNC Symbol;Acc:HGNC:6595]
OrganismHomo sapiens (human)
Synonym(s)cphd3, lim3, m2-lhx3, q5tb39, q5tb40, q9nzb5, q9p0i8, q9p0i9

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000007pituitary gland
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
1.61e3
  • 1.61e3
  • 2.58e3
  • 3.70e3
  • 3.77e3
  • 4.89e3
  • 5.38e3
  • 5.96e3
  • 6.84e3
  • 8.66e3
97.02569
  • 97.02569
  • 95.23924
  • 93.16713
  • 93.02961
  • 90.97414
  • 90.06426
  • 89.00190
  • 87.37137
  • 84.00201
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.23e3
  • 3.23e3
  • 4.91e3
  • 5.17e3
  • 7.29e3
94.03783
  • 94.03783
  • 90.93797
  • 90.45772
  • 86.54003
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000199fifth LMP month human stage (human)
  • HsapDv:0000200sixth LMP month human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
7.20e3
  • 7.20e3
  • 1.87e4
  • 2.08e4
  • 2.08e4
  • 2.46e4
  • 2.50e4
86.70541
  • 86.70541
  • 65.54906
  • 61.65695
  • 61.51681
  • 54.47798
  • 53.82798
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
7.65e3
  • 7.65e3
  • 2.08e4
85.87687
  • 85.87687
  • 61.63271
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000089young adult stage (human)
7.73e3
  • 7.73e3
  • 2.57e4
85.71680
  • 85.71680
  • 52.48428
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
7.78e3
  • 7.78e3
  • 1.10e4
  • 2.49e4
  • 2.54e4
85.63168
  • 85.63168
  • 79.62205
  • 54.04306
  • 53.06984
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001379vastus lateralis
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000093human aged stage
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
7.85e3
  • 7.85e3
  • 7.93e3
  • 1.53e4
  • 1.96e4
  • 2.00e4
  • 2.44e4
85.49904
  • 85.49904
  • 85.36123
  • 71.81745
  • 63.75206
  • 63.02217
  • 54.92933
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
8.14e3
  • 8.14e3
  • 2.54e4
  • 3.18e4
  • 3.90e4
  • 4.01e4
  • 4.50e4
84.95923
  • 84.95923
  • 53.08204
  • 41.23735
  • 27.92641
  • 25.97245
  • 16.83971
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
8.25e3
  • 8.25e3
  • 1.78e4
  • 3.10e4
  • 3.30e4
  • 3.70e4
  • 3.72e4
84.77101
  • 84.77101
  • 67.15106
  • 42.76661
  • 39.10557
  • 31.58833
  • 31.31420
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
9.55e3
  • 9.55e3
  • 1.21e4
82.35358
  • 82.35358
  • 77.74242
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
1.12e4
  • 1.12e4
  • 2.48e4
79.29855
  • 79.29855
  • 54.16327
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000104life cycle
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.15e4
  • 1.15e4
  • 3.11e4
  • 3.14e4
  • 3.25e4
  • 3.32e4
  • 3.36e4
  • 3.90e4
78.76423
  • 78.76423
  • 42.53716
  • 41.93470
  • 40.01017
  • 38.62359
  • 37.88539
  • 28.04859
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003244epithelium of mammary gland
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.19e4
  • 1.19e4
  • 1.64e4
  • 1.70e4
  • 2.90e4
78.01975
  • 78.01975
  • 69.68024
  • 68.60728
  • 46.40474
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • HsapDv:0000203ninth LMP month human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • UBERON:0000104life cycle
  • HsapDv:000007538th week post-fertilization and over human stage (human)
  • UBERON:0007220late embryonic stage
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
1.25e4
  • 1.25e4
  • 2.01e4
  • 2.08e4
  • 2.69e4
  • 2.76e4
  • 2.99e4
  • 3.16e4
  • 4.36e4
76.97096
  • 76.97096
  • 62.92578
  • 61.65835
  • 50.35262
  • 49.01890
  • 44.76830
  • 41.65132
  • 19.52645
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
1.49e4
  • 1.49e4
  • 2.19e4
  • 2.26e4
72.48583
  • 72.48583
  • 59.54029
  • 58.22122
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
  • 1.84e4
  • 2.28e4
  • 2.31e4
  • 2.98e4
71.48938
  • 71.48938
  • 65.98279
  • 57.93485
  • 57.34914
  • 44.91381
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
71.30991
  • 71.30991
AEIR
  • AEIR
UBERON:0002038substantia nigra
  • UBERON:0000104life cycle
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
1.59e4
  • 1.59e4
  • 2.39e4
  • 3.05e4
  • 3.89e4
  • 4.55e4
70.65348
  • 70.65348
  • 55.79127
  • 43.68419
  • 28.21800
  • 16.03864
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • HsapDv:0000093human aged stage
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
1.62e4
  • 1.62e4
  • 1.76e4
  • 1.83e4
70.09444
  • 70.09444
  • 67.44106
  • 66.17258
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.70e4
  • 1.70e4
  • 3.16e4
  • 3.67e4
68.61007
  • 68.61007
  • 41.56591
  • 32.18664
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
1.73e4
  • 1.73e4
  • 2.84e4
  • 3.03e4
68.03829
  • 68.03829
  • 47.51704
  • 44.02154
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
1.81e4
  • 1.81e4
  • 2.58e4
66.55683
  • 66.55683
  • 52.30178
AEIR
  • AEIR
  • AEIR
UBERON:0003911choroid plexus epithelium
  • UBERON:0000104life cycle
1.83e4
  • 1.83e4
66.13479
  • 66.13479
AEIR
  • AEIR
UBERON:0002037cerebellum
  • HsapDv:00000856-12 year-old child stage (human)
  • HsapDv:0000086adolescent stage (human)
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
1.87e4
  • 1.87e4
  • 1.98e4
  • 2.09e4
  • 2.48e4
  • 3.09e4
65.42334
  • 65.42334
  • 63.39608
  • 61.38090
  • 54.26224
  • 42.83860
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001906subthalamic nucleus
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.17e4
  • 2.17e4
  • 2.26e4
  • 2.51e4
59.82735
  • 59.82735
  • 58.32050
  • 53.66449
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002384connective tissue
  • UBERON:0000104life cycle
2.22e4
  • 2.22e4
59.05085
  • 59.05085
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
2.26e4
  • 2.26e4
58.24990
  • 58.24990
AEIR
  • AEIR
UBERON:0001891midbrain
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.36e4
  • 2.36e4
  • 2.43e4
56.44122
  • 56.44122
  • 55.18540
AEIR
  • AEIR
  • AEIR
UBERON:0001872parietal lobe
  • HsapDv:000009025-44 year-old human stage (human)
2.44e4
  • 2.44e4
54.87766
  • 54.87766
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
2.47e4
  • 2.47e4
54.41623
  • 54.41623
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
2.47e4
  • 2.47e4
54.32885
  • 54.32885
AEIR
  • AEIR
UBERON:0001882nucleus accumbens
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.49e4
  • 2.49e4
  • 3.17e4
  • 3.27e4
  • 3.99e4
  • 4.00e4
53.91908
  • 53.91908
  • 41.38042
  • 39.55817
  • 26.35330
  • 26.17363
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
2.50e4
  • 2.50e4
  • 2.92e4
53.84643
  • 53.84643
  • 46.06973
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.53e4
  • 2.53e4
  • 2.54e4
53.33450
  • 53.33450
  • 53.10606
AEIR
  • AEIR
  • AEIR
UBERON:0003889fallopian tube
  • UBERON:0000104life cycle
2.54e4
  • 2.54e4
53.01151
  • 53.01151
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.55e4
  • 2.55e4
52.95251
  • 52.95251
AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • HsapDv:000009465-79 year-old human stage (human)
2.57e4
  • 2.57e4
52.50436
  • 52.50436
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
2.64e4
  • 2.64e4
  • 3.01e4
  • 3.08e4
  • 3.16e4
51.30925
  • 51.30925
  • 44.44509
  • 43.09350
  • 41.70628
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • HsapDv:0000089young adult stage (human)
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000086adolescent stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.65e4
  • 2.65e4
  • 2.78e4
  • 3.01e4
  • 3.05e4
  • 3.11e4
  • 3.39e4
  • 3.60e4
  • 3.64e4
  • 3.82e4
51.00068
  • 51.00068
  • 48.59632
  • 44.34712
  • 43.65396
  • 42.61696
  • 37.33703
  • 33.59568
  • 32.78042
  • 29.44595
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002728entorhinal cortex
  • HsapDv:000009465-79 year-old human stage (human)
  • UBERON:0000104life cycle
2.91e4
  • 2.91e4
  • 3.20e4
46.30012
  • 46.30012
  • 40.83019
AEIR
  • AEIR
  • AEIR
UBERON:0002250popliteal artery
  • HsapDv:0000092human middle aged stage (human)
2.99e4
  • 2.99e4
44.82644
  • 44.82644
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.13e4
  • 3.13e4
  • 3.81e4
  • 4.15e4
42.18233
  • 42.18233
  • 29.55675
  • 23.42142
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004804oviduct epithelium
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
3.15e4
  • 3.15e4
  • 3.16e4
41.76287
  • 41.76287
  • 41.71604
AEIR
  • AEIR
  • AEIR
UBERON:0007610tibial artery
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
3.66e4
  • 3.66e4
  • 3.76e4
  • 3.81e4
32.38284
  • 32.38284
  • 30.60028
  • 29.56720
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006469C1 segment of cervical spinal cord
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.83e4
  • 3.83e4
  • 4.01e4
29.27323
  • 29.27323
  • 25.91983
AEIR
  • AEIR
  • AEIR
UBERON:0000996vagina
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
3.86e4
  • 3.86e4
  • 3.96e4
  • 4.18e4
  • 4.33e4
  • 4.60e4
28.75923
  • 28.75923
  • 26.86697
  • 22.83287
  • 19.98423
  • 15.04346
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035841esophagogastric junction muscularis propria
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
3.98e4
  • 3.98e4
  • 4.11e4
  • 4.20e4
26.55307
  • 26.55307
  • 24.09965
  • 22.49976
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001120left lobe of thyroid gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.16e4
  • 4.16e4
  • 4.35e4
23.08229
  • 23.08229
  • 19.65850
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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