H. sapiens Gene: APOBEC1 - ENSG00000111701 - Homo sapiens (human)

General information

Ensembl IDENSG00000111701
NameAPOBEC1
Descriptionapolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:604]
OrganismHomo sapiens (human)
Synonym(s)apobec-1, bedp, cdar1, hepr, q9ue64, q9um71

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002114duodenum
  • HsapDv:0000088human early adulthood stage (human)
  • UBERON:0000104life cycle
1.01e3
  • 1.01e3
  • 3.19e4
98.13850
  • 98.13850
  • 40.99459
AEIR
  • AEIR
  • AEIR
UBERON:0000399jejunal mucosa
  • UBERON:0000104life cycle
1.63e3
  • 1.63e3
96.99326
  • 96.99326
AEIR
  • AEIR
UBERON:0003454small intestine Peyer's patch
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
6.08e3
  • 6.08e3
  • 7.50e3
  • 8.00e3
  • 1.06e4
  • 1.07e4
  • 2.16e4
88.76227
  • 88.76227
  • 86.14236
  • 85.22936
  • 80.36115
  • 80.32981
  • 60.12782
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001159sigmoid colon
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
9.16e3
  • 9.16e3
  • 1.71e4
83.09073
  • 83.09073
  • 68.38814
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • HsapDv:0000198fourth LMP month human stage (human)
  • HsapDv:0000199fifth LMP month human stage (human)
9.37e3
  • 9.37e3
  • 1.61e4
82.69792
  • 82.69792
  • 70.30991
AEIR
  • AEIR
  • AEIR
UBERON:0004991mucosa of transverse colon
  • HsapDv:000009025-44 year-old human stage (human)
9.49e3
  • 9.49e3
82.47442
  • 82.47442
AEIR
  • AEIR
UBERON:0000317colonic mucosa
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
  • 1.13e4
  • 1.22e4
  • 1.94e4
79.88779
  • 79.88779
  • 79.13527
  • 77.43411
  • 64.10832
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
  • HsapDv:000009580 year-old and over human stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
1.46e4
  • 1.46e4
  • 2.01e4
  • 2.06e4
  • 2.30e4
  • 2.33e4
  • 2.83e4
  • 3.62e4
72.99368
  • 72.99368
  • 62.91657
  • 61.97071
  • 57.47290
  • 56.99847
  • 47.71171
  • 33.19417
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001199mucosa of stomach
  • HsapDv:0000091human late adulthood stage (human)
1.78e4
  • 1.78e4
67.07673
  • 67.07673
AEIR
  • AEIR
UBERON:0001157transverse colon
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.82e4
  • 1.82e4
  • 1.82e4
  • 2.06e4
  • 2.24e4
  • 2.40e4
66.47148
  • 66.47148
  • 66.36091
  • 61.96363
  • 58.55386
  • 55.60451
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
2.16e4
  • 2.16e4
60.06349
  • 60.06349
AEIR
  • AEIR
UBERON:0002384connective tissue
  • UBERON:0000104life cycle
2.48e4
  • 2.48e4
54.24465
  • 54.24465
AEIR
  • AEIR
UBERON:0004993mucosa of sigmoid colon
  • HsapDv:000009025-44 year-old human stage (human)
2.52e4
  • 2.52e4
53.41071
  • 53.41071
AEIR
  • AEIR
UBERON:0001161body of stomach
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
2.56e4
  • 2.56e4
  • 3.14e4
  • 3.23e4
  • 3.47e4
  • 3.67e4
52.77809
  • 52.77809
  • 42.02701
  • 40.37305
  • 35.86872
  • 32.26257
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000199fifth LMP month human stage (human)
2.61e4
  • 2.61e4
  • 2.85e4
  • 3.66e4
51.77450
  • 51.77450
  • 47.44735
  • 32.31789
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • UBERON:0000104life cycle
2.66e4
  • 2.66e4
50.94653
  • 50.94653
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
2.67e4
  • 2.67e4
50.60664
  • 50.60664
AEIR
  • AEIR
UBERON:0001264pancreas
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
2.72e4
  • 2.72e4
  • 2.96e4
49.67709
  • 49.67709
  • 45.36054
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0000104life cycle
  • HsapDv:0000087human adult stage (human)
2.77e4
  • 2.77e4
  • 4.18e4
48.87223
  • 48.87223
  • 22.74807
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000198fourth LMP month human stage (human)
  • UBERON:0000104life cycle
2.80e4
  • 2.80e4
  • 3.02e4
  • 3.21e4
  • 3.24e4
48.19879
  • 48.19879
  • 44.13985
  • 40.79563
  • 40.09357
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
2.81e4
  • 2.81e4
  • 3.70e4
48.04519
  • 48.04519
  • 31.66344
AEIR
  • AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0000104life cycle
3.16e4
  • 3.16e4
41.57942
  • 41.57942
AEIR
  • AEIR
UBERON:0035805muscle layer of sigmoid colon
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
3.74e4
  • 3.74e4
  • 3.88e4
  • 4.01e4
  • 4.14e4
  • 4.22e4
30.88032
  • 30.88032
  • 28.41653
  • 25.92152
  • 23.46843
  • 22.10322
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001150body of pancreas
  • HsapDv:0000087human adult stage (human)
3.92e4
  • 3.92e4
27.58050
  • 27.58050
AEIR
  • AEIR
UBERON:0035841esophagogastric junction muscularis propria
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
4.03e4
  • 4.03e4
  • 4.39e4
  • 4.42e4
25.53118
  • 25.53118
  • 18.93561
  • 18.44660
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035833lower esophagus muscularis layer
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.24e4
  • 4.24e4
  • 4.43e4
21.61925
  • 21.61925
  • 18.22352
AEIR
  • AEIR
  • AEIR
UBERON:0002469esophagus mucosa
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
4.36e4
  • 4.36e4
  • 4.40e4
19.48809
  • 19.48809
  • 18.66609
AEIR
  • AEIR
  • AEIR
UBERON:0007610tibial artery
  • HsapDv:0000087human adult stage (human)
4.36e4
  • 4.36e4
19.47495
  • 19.47495
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS8579 (CCDS8579.1)
EMBLAB009426, AC006927, L25877, L26234, U72891, U78720
EnsemblENSG00000111701 (APOBEC1)
HGNCHGNC:604 (APOBEC1)
Uniprot/SPTREMBLA0A0B4J232, A0A0B4J232_HUMAN
Uniprot/SWISSPROTABEC1_HUMAN, P41238

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