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H. sapiens Gene: VCY1B - ENSG00000129862 - Homo sapiens (human)

General information

Ensembl IDENSG00000129862
NameVCY1B
Descriptionvariable charge, Y-linked 1B [Source:HGNC Symbol;Acc:HGNC:31751]
OrganismHomo sapiens (human)
Synonym(s)bpy1, bpy1b, vcy1a
Orthologs(s)6 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004534right testis
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.28e3
  • 1.28e3
  • 8.52e3
  • 1.06e4
  • 1.19e4
  • 1.70e4
97.67
  • 97.67
  • 84.54
  • 80.79
  • 78.46
  • 69.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000089young adult stage (human)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
2.02e3
  • 2.02e3
  • 2.07e3
  • 1.48e4
  • 2.28e4
  • 2.47e4
  • 4.16e4
  • 4.21e4
96.33
  • 96.33
  • 96.24
  • 73.11
  • 58.56
  • 55.09
  • 24.46
  • 23.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004533left testis
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
8.49e3
  • 8.49e3
  • 1.23e4
  • 1.43e4
  • 1.50e4
  • 1.87e4
  • 3.13e4
84.58
  • 84.58
  • 77.58
  • 74.11
  • 72.85
  • 65.99
  • 43.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000092human middle aged stage (human)
1.55e4
  • 1.55e4
  • 4.14e4
  • 4.38e4
71.77
  • 71.77
  • 24.75
  • 20.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001515thoracic aorta
  • HsapDv:0000087human adult stage (human)
3.73e4
  • 3.73e4
32.36
  • 32.36
AEIR
  • AEIR
UBERON:0001987placenta
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000113post-juvenile adult stage
3.75e4
  • 3.75e4
  • 4.34e4
31.98
  • 31.98
  • 21.18
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • HsapDv:0000086adolescent stage (human)
  • HsapDv:0000089young adult stage (human)
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
3.97e4
  • 3.97e4
  • 3.98e4
  • 4.04e4
  • 4.16e4
27.88
  • 27.88
  • 27.79
  • 26.66
  • 24.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
4.04e4
  • 4.04e4
  • 4.08e4
  • 4.32e4
26.60
  • 26.60
  • 25.92
  • 21.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.06e4
  • 4.06e4
26.31
  • 26.31
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.14e4
  • 4.14e4
  • 4.22e4
  • 4.35e4
24.83
  • 24.83
  • 23.31
  • 21.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009835anterior cingulate cortex
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.16e4
  • 4.16e4
  • 4.61e4
  • 4.72e4
24.41
  • 24.41
  • 16.30
  • 14.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001830minor salivary gland
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
4.19e4
  • 4.19e4
  • 4.40e4
  • 4.44e4
23.88
  • 23.88
  • 20.14
  • 19.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • HsapDv:0000091human late adulthood stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
4.22e4
  • 4.22e4
  • 4.28e4
  • 4.47e4
  • 4.51e4
23.42
  • 23.42
  • 22.23
  • 18.82
  • 18.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005200thoracic mammary gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.23e4
  • 4.23e4
  • 4.53e4
23.20
  • 23.20
  • 17.76
AEIR
  • AEIR
  • AEIR
UBERON:0001496ascending aorta
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
4.28e4
  • 4.28e4
  • 4.37e4
22.22
  • 22.22
  • 20.57
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000104life cycle
4.28e4
  • 4.28e4
22.20
  • 22.20
AEIR
  • AEIR
UBERON:0035805muscle layer of sigmoid colon
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.29e4
  • 4.29e4
  • 4.52e4
22.06
  • 22.06
  • 17.87
AEIR
  • AEIR
  • AEIR
UBERON:0001150body of pancreas
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
4.29e4
  • 4.29e4
  • 4.30e4
  • 4.41e4
22.02
  • 22.02
  • 21.95
  • 19.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007610tibial artery
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
4.30e4
  • 4.30e4
  • 4.33e4
  • 4.35e4
  • 4.43e4
21.91
  • 21.91
  • 21.37
  • 21.10
  • 19.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001120left lobe of thyroid gland
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
4.31e4
  • 4.31e4
  • 4.39e4
  • 4.45e4
21.73
  • 21.73
  • 20.32
  • 19.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000113post-juvenile adult stage
4.38e4
  • 4.38e4
20.52
  • 20.52
AEIR
  • AEIR
UBERON:0001323tibial nerve
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.40e4
  • 4.40e4
  • 4.55e4
20.15
  • 20.15
  • 17.37
AEIR
  • AEIR
  • AEIR
UBERON:0001873caudate nucleus
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.40e4
  • 4.40e4
  • 4.41e4
  • 4.50e4
20.10
  • 20.10
  • 19.89
  • 18.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001416skin of abdomen
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.41e4
  • 4.41e4
  • 4.48e4
19.93
  • 19.93
  • 18.71
AEIR
  • AEIR
  • AEIR
UBERON:0001882nucleus accumbens
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
4.45e4
  • 4.45e4
  • 4.52e4
  • 4.68e4
19.24
  • 19.24
  • 17.89
  • 15.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001511skin of leg
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.45e4
  • 4.45e4
  • 4.59e4
19.18
  • 19.18
  • 16.62
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Homininae5 genesCompare expression

Paralogy information comes from OMA : ENSG00000129862.

Cross-references

CCDSCCDS56618 (CCDS56618.1)
EnsemblENSG00000129862 (VCY1B)
HGNCHGNC:31751 (VCY1B)
EMBLAC006370, AF000979, BC056508
Uniprot/SWISSPROTO14598, VCY1_HUMAN

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