H. sapiens Gene: TRIM42 - ENSG00000155890 - Homo sapiens (human)

General information

Ensembl IDENSG00000155890
NameTRIM42
Descriptiontripartite motif containing 42 [Source:HGNC Symbol;Acc:HGNC:19014]
OrganismHomo sapiens (human)
Synonym(s)a1l4b4, flj40097, ppp1r40, q8n832, q8ndl3, t4a1
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • HsapDv:000009580 year-old and over human stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0034920infant stage
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0000104life cycle
6.58e3
  • 6.58e3
  • 9.75e3
  • 1.01e4
  • 1.04e4
  • 1.34e4
  • 1.35e4
  • 2.68e4
88.06
  • 88.06
  • 82.31
  • 81.63
  • 81.11
  • 75.73
  • 75.58
  • 51.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004533left testis
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
7.91e3
  • 7.91e3
  • 9.09e3
  • 9.32e3
  • 9.56e3
  • 1.01e4
  • 1.03e4
85.64
  • 85.64
  • 83.51
  • 83.08
  • 82.64
  • 81.59
  • 81.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004534right testis
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
8.34e3
  • 8.34e3
  • 9.01e3
  • 9.16e3
  • 1.74e4
  • 1.75e4
84.86
  • 84.86
  • 83.65
  • 83.36
  • 68.45
  • 68.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • HsapDv:0000087human adult stage (human)
2.38e4
  • 2.38e4
56.73
  • 56.73
AEIR
  • AEIR
UBERON:0000467anatomical system
  • UBERON:0007220late embryonic stage
  • UBERON:0000104life cycle
2.69e4
  • 2.69e4
  • 3.27e4
51.16
  • 51.16
  • 40.66
AEIR
  • AEIR
  • AEIR
CL:0000019sperm
  • HsapDv:0000088human early adulthood stage (human)
3.14e4
  • 3.14e4
42.93
  • 42.93
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000113post-juvenile adult stage
3.16e4
  • 3.16e4
  • 3.16e4
  • 3.80e4
42.64
  • 42.64
  • 42.57
  • 31.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • HsapDv:0000087human adult stage (human)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.22e4
  • 3.22e4
  • 3.23e4
  • 4.38e4
41.52
  • 41.52
  • 41.33
  • 20.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.24e4
  • 3.24e4
  • 4.09e4
  • 4.18e4
  • 4.21e4
  • 4.52e4
41.16
  • 41.16
  • 25.82
  • 24.11
  • 23.63
  • 18.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.36e4
  • 3.36e4
  • 3.48e4
  • 3.50e4
38.98
  • 38.98
  • 36.86
  • 36.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001323tibial nerve
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.11e4
  • 4.11e4
  • 4.32e4
25.28
  • 25.28
  • 21.57
AEIR
  • AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
4.12e4
  • 4.12e4
  • 4.12e4
  • 4.18e4
25.14
  • 25.14
  • 25.13
  • 24.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001511skin of leg
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
4.19e4
  • 4.19e4
  • 4.32e4
23.92
  • 23.92
  • 21.62
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression

Orthology information comes from OMA : ENSG00000155890.

Cross-references

CCDSCCDS3113 (CCDS3113.1)
EnsemblENSG00000155890 (TRIM42)
HGNCHGNC:19014 (TRIM42)
EMBLAC026324, AF521868, AK097416, AL833848, BC130472, CH471052
OncoMXTRIM42 (TRIM42)
Uniprot/SWISSPROTQ8IWZ5, TRI42_HUMAN

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