H. sapiens Gene: HOXC5 - ENSG00000172789 - Homo sapiens (human)

General information

Ensembl IDENSG00000172789
NameHOXC5
Descriptionhomeobox C5 [Source:HGNC Symbol;Acc:HGNC:5127]
OrganismHomo sapiens (human)
Synonym(s)cp11, hox3, hox3d

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0001043esophagus
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.30e4
  • 1.30e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
UBERON:0001303left uterine tube
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
1.30e4
  • 1.30e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0013473lower esophagus
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.42e4
  • 1.42e4
  • 1.66e4
AEIR
  • AEIR
  • AEIR
UBERON:0002118right ovary
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.54e4
  • 1.54e4
  • 1.59e4
  • 1.61e4
  • 1.62e4
  • 1.71e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001161body of stomach
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.60e4
  • 1.60e4
  • 1.74e4
  • 1.74e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001160fundus of stomach
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.60e4
  • 1.60e4
  • 1.66e4
  • 1.66e4
  • 1.99e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002119left ovary
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.61e4
  • 1.61e4
  • 1.61e4
  • 1.69e4
  • 1.72e4
  • 1.81e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
1.67e4
  • 1.67e4
  • 1.89e4
  • 1.91e4
  • 1.94e4
  • 1.97e4
  • 2.01e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001302right uterine tube
  • HsapDv:000009025-44 year-old human stage (human)
1.68e4
  • 1.68e4
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
1.70e4
  • 1.70e4
  • 1.85e4
  • 2.29e4
  • 2.41e4
  • 2.69e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006469C1 segment of cervical spinal cord
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.76e4
  • 1.76e4
  • 1.77e4
  • 1.92e4
  • 1.97e4
  • 2.04e4
  • 2.06e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • HsapDv:0000197third LMP month human stage (human)
  • HsapDv:0000199fifth LMP month human stage (human)
1.77e4
  • 1.77e4
  • 2.21e4
AEIR
  • AEIR
  • AEIR
UBERON:0001234left adrenal gland
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.81e4
  • 1.81e4
  • 1.92e4
  • 1.94e4
  • 2.13e4
  • 2.15e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001323tibial nerve
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.81e4
  • 1.81e4
  • 1.90e4
  • 1.90e4
  • 1.90e4
  • 1.91e4
  • 1.91e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005200thoracic mammary gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
1.82e4
  • 1.82e4
  • 1.89e4
  • 1.90e4
  • 1.99e4
  • 2.07e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001233right adrenal gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
1.86e4
  • 1.86e4
  • 1.88e4
  • 2.09e4
  • 2.10e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007610tibial artery
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.86e4
  • 1.86e4
  • 1.89e4
  • 1.90e4
  • 1.94e4
  • 1.94e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035841esophagogastric junction muscularis propria
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.88e4
  • 1.88e4
  • 1.95e4
  • 1.95e4
  • 2.02e4
  • 2.09e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002469esophagus mucosa
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.88e4
  • 1.88e4
  • 1.93e4
  • 2.04e4
  • 2.08e4
  • 2.13e4
  • 2.22e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035833lower esophagus muscularis layer
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
1.90e4
  • 1.90e4
  • 2.02e4
  • 2.06e4
  • 2.14e4
  • 2.15e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.97e4
  • 1.97e4
  • 2.14e4
  • 2.16e4
  • 2.17e4
  • 2.17e4
  • 2.31e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035825left adrenal gland cortex
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
1.99e4
  • 1.99e4
  • 2.00e4
  • 2.06e4
  • 2.23e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.00e4
  • 2.00e4
  • 2.12e4
AEIR
  • AEIR
  • AEIR
UBERON:0035827right adrenal gland cortex
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.03e4
  • 2.03e4
  • 2.34e4
AEIR
  • AEIR
  • AEIR
UBERON:0001515thoracic aorta
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
2.04e4
  • 2.04e4
  • 2.54e4
  • 2.79e4
  • 2.82e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001511skin of leg
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.07e4
  • 2.07e4
  • 2.08e4
  • 2.10e4
  • 2.17e4
  • 2.19e4
  • 2.20e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010414omental fat pad
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.12e4
  • 2.12e4
  • 2.13e4
  • 2.22e4
  • 2.26e4
  • 2.29e4
  • 2.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004534right testis
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
2.13e4
  • 2.13e4
  • 2.34e4
  • 2.35e4
  • 2.35e4
  • 2.36e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001416skin of abdomen
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
2.13e4
  • 2.13e4
  • 2.15e4
  • 2.16e4
  • 2.18e4
  • 2.22e4
  • 2.35e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003454small intestine Peyer's patch
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.14e4
  • 2.14e4
  • 2.17e4
  • 2.35e4
  • 2.37e4
  • 2.49e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001199mucosa of stomach
  • HsapDv:0000091human late adulthood stage (human)
2.15e4
  • 2.15e4
AEIR
  • AEIR
UBERON:0001296myometrium
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.26e4
  • 2.26e4
  • 2.39e4
  • 2.49e4
  • 2.53e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002345descending thoracic aorta
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
2.27e4
  • 2.27e4
  • 2.49e4
AEIR
  • AEIR
  • AEIR
UBERON:0009853body of uterus
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.33e4
  • 2.33e4
  • 2.39e4
  • 2.52e4
  • 2.78e4
  • 2.86e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.34e4
  • 2.34e4
  • 2.56e4
  • 2.57e4
  • 3.59e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004533left testis
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
2.34e4
  • 2.34e4
  • 2.38e4
  • 2.41e4
  • 2.43e4
  • 2.44e4
  • 2.61e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • HsapDv:000009580 year-old and over human stage (human)
2.35e4
  • 2.35e4
AEIR
  • AEIR
UBERON:0000945stomach
  • HsapDv:0000199fifth LMP month human stage (human)
2.38e4
  • 2.38e4
AEIR
  • AEIR
UBERON:0001119right lobe of thyroid gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
2.48e4
  • 2.48e4
  • 2.50e4
  • 2.81e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001626left coronary artery
  • HsapDv:0000087human adult stage (human)
2.52e4
  • 2.52e4
AEIR
  • AEIR
UBERON:0001496ascending aorta
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.62e4
  • 2.62e4
  • 2.70e4
  • 2.71e4
  • 3.39e4
  • 3.44e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001120left lobe of thyroid gland
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.87e4
  • 2.87e4
  • 2.99e4
  • 3.11e4
  • 3.19e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035805muscle layer of sigmoid colon
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.03e4
  • 3.03e4
  • 3.13e4
  • 3.21e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • HsapDv:0000197third LMP month human stage (human)
  • HsapDv:0000092human middle aged stage (human)
3.13e4
  • 3.13e4
  • 4.34e4
AEIR
  • AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.21e4
  • 3.21e4
  • 3.48e4
  • 3.50e4
  • 3.53e4
  • 3.57e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001157transverse colon
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
3.30e4
  • 3.30e4
  • 3.65e4
  • 3.66e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006631right atrium auricular region
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.30e4
  • 3.30e4
  • 3.71e4
  • 3.88e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
3.49e4
  • 3.49e4
  • 3.61e4
  • 3.85e4
  • 4.05e4
  • 4.26e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000996vagina
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.53e4
  • 3.53e4
  • 3.74e4
AEIR
  • AEIR
  • AEIR
UBERON:0002038substantia nigra
  • HsapDv:0000087human adult stage (human)
3.80e4
  • 3.80e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS8872 (CCDS8872.1)
EMBLX61755
EnsemblENSG00000172789 (HOXC5)
HGNCHGNC:5127 (HOXC5)
Uniprot/SWISSPROTHXC5_HUMAN, Q00444

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