H. sapiens Gene: PTX4 - ENSG00000251692 - Homo sapiens (human)

General information

Ensembl IDENSG00000251692
NamePTX4
Descriptionpentraxin 4 [Source:HGNC Symbol;Acc:HGNC:14171]
OrganismHomo sapiens (human)
Synonym(s)c16orf38
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000738leukocyte
  • HsapDv:0000092human middle aged stage (human)
1.87e4
  • 1.87e4
65.99
  • 65.99
AEIR
  • AEIR
CL:0000576monocyte
  • UBERON:0000113post-juvenile adult stage
1.92e4
  • 1.92e4
65.20
  • 65.20
AEIR
  • AEIR
UBERON:0035833lower esophagus muscularis layer
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.12e4
  • 2.12e4
  • 2.60e4
  • 2.66e4
  • 2.67e4
  • 2.74e4
61.52
  • 61.52
  • 52.80
  • 51.63
  • 51.58
  • 50.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007220late embryonic stage
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.17e4
  • 2.17e4
  • 3.98e4
  • 4.60e4
  • 4.71e4
  • 4.73e4
60.63
  • 60.63
  • 27.75
  • 16.45
  • 14.47
  • 14.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001233right adrenal gland
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.21e4
  • 2.21e4
  • 2.33e4
  • 2.50e4
  • 3.05e4
59.79
  • 59.79
  • 57.67
  • 54.58
  • 44.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035825left adrenal gland cortex
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.23e4
  • 2.23e4
  • 2.25e4
  • 2.59e4
59.60
  • 59.60
  • 59.21
  • 52.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000089young adult stage (human)
  • UBERON:0000113post-juvenile adult stage
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000104life cycle
2.30e4
  • 2.30e4
  • 2.60e4
  • 2.66e4
  • 2.71e4
  • 2.93e4
  • 4.16e4
58.25
  • 58.25
  • 52.72
  • 51.67
  • 50.74
  • 46.88
  • 24.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035827right adrenal gland cortex
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.33e4
  • 2.33e4
  • 2.33e4
57.76
  • 57.76
  • 57.70
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.35e4
  • 2.35e4
  • 2.49e4
  • 2.86e4
  • 2.92e4
  • 3.02e4
  • 3.07e4
  • 3.11e4
57.30
  • 57.30
  • 54.81
  • 48.16
  • 46.95
  • 45.15
  • 44.20
  • 43.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0000113post-juvenile adult stage
2.38e4
  • 2.38e4
56.87
  • 56.87
AEIR
  • AEIR
UBERON:0004534right testis
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.42e4
  • 2.42e4
  • 2.67e4
  • 2.78e4
  • 2.79e4
  • 2.92e4
56.13
  • 56.13
  • 51.56
  • 49.51
  • 49.41
  • 47.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001234left adrenal gland
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000088human early adulthood stage (human)
2.42e4
  • 2.42e4
  • 2.46e4
  • 2.66e4
  • 2.82e4
56.12
  • 56.12
  • 55.34
  • 51.70
  • 48.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.53e4
  • 2.53e4
  • 2.77e4
  • 2.81e4
  • 2.92e4
  • 2.97e4
54.08
  • 54.08
  • 49.63
  • 48.92
  • 47.00
  • 46.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010414omental fat pad
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.68e4
  • 2.68e4
  • 2.78e4
  • 2.90e4
  • 3.02e4
51.36
  • 51.36
  • 49.61
  • 47.37
  • 45.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009835anterior cingulate cortex
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.72e4
  • 2.72e4
  • 2.87e4
50.58
  • 50.58
  • 47.95
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000113post-juvenile adult stage
2.73e4
  • 2.73e4
50.39
  • 50.39
AEIR
  • AEIR
UBERON:0001296myometrium
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.75e4
  • 2.75e4
  • 3.63e4
50.11
  • 50.11
  • 34.11
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.76e4
  • 2.76e4
  • 2.94e4
  • 3.17e4
49.92
  • 49.92
  • 46.56
  • 42.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004533left testis
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
2.76e4
  • 2.76e4
  • 2.80e4
  • 2.80e4
  • 2.81e4
  • 2.85e4
  • 3.06e4
49.83
  • 49.83
  • 49.23
  • 49.23
  • 49.04
  • 48.19
  • 44.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
2.76e4
  • 2.76e4
  • 2.77e4
49.81
  • 49.81
  • 49.70
AEIR
  • AEIR
  • AEIR
UBERON:0001496ascending aorta
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.77e4
  • 2.77e4
  • 2.91e4
49.69
  • 49.69
  • 47.10
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.78e4
  • 2.78e4
  • 2.78e4
  • 2.89e4
49.54
  • 49.54
  • 49.53
  • 47.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002367prostate gland
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000113post-juvenile adult stage
2.78e4
  • 2.78e4
  • 2.83e4
  • 2.89e4
  • 2.90e4
  • 3.07e4
  • 3.49e4
49.44
  • 49.44
  • 48.54
  • 47.57
  • 47.37
  • 44.21
  • 36.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035841esophagogastric junction muscularis propria
  • HsapDv:0000087human adult stage (human)
2.80e4
  • 2.80e4
49.07
  • 49.07
AEIR
  • AEIR
UBERON:0001626left coronary artery
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.83e4
  • 2.83e4
  • 2.85e4
  • 3.07e4
48.57
  • 48.57
  • 48.21
  • 44.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.88e4
  • 2.88e4
  • 3.50e4
47.67
  • 47.67
  • 36.40
AEIR
  • AEIR
  • AEIR
UBERON:0001873caudate nucleus
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.89e4
  • 2.89e4
  • 3.06e4
  • 3.08e4
47.52
  • 47.52
  • 44.36
  • 44.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006631right atrium auricular region
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.91e4
  • 2.91e4
  • 2.91e4
47.17
  • 47.17
  • 47.13
AEIR
  • AEIR
  • AEIR
UBERON:0002038substantia nigra
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.91e4
  • 2.91e4
  • 3.13e4
  • 3.25e4
47.15
  • 47.15
  • 43.12
  • 40.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • HsapDv:0000086adolescent stage (human)
  • UBERON:0000104life cycle
  • HsapDv:000009025-44 year-old human stage (human)
2.91e4
  • 2.91e4
  • 3.15e4
  • 3.30e4
47.14
  • 47.14
  • 42.76
  • 40.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0035805muscle layer of sigmoid colon
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.93e4
  • 2.93e4
  • 3.00e4
46.86
  • 46.86
  • 45.46
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
2.93e4
  • 2.93e4
  • 3.12e4
  • 3.35e4
46.83
  • 46.83
  • 43.34
  • 39.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
2.95e4
  • 2.95e4
  • 2.98e4
  • 2.99e4
  • 3.06e4
  • 3.08e4
46.42
  • 46.42
  • 45.92
  • 45.67
  • 44.37
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
2.98e4
  • 2.98e4
  • 2.99e4
45.90
  • 45.90
  • 45.74
AEIR
  • AEIR
  • AEIR
UBERON:0001161body of stomach
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000088human early adulthood stage (human)
3.17e4
  • 3.17e4
  • 3.33e4
  • 3.35e4
  • 3.49e4
  • 3.67e4
42.42
  • 42.42
  • 39.60
  • 39.19
  • 36.64
  • 33.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • HsapDv:0000088human early adulthood stage (human)
  • UBERON:0000113post-juvenile adult stage
3.18e4
  • 3.18e4
  • 3.51e4
42.33
  • 42.33
  • 36.23
AEIR
  • AEIR
  • AEIR
UBERON:0001323tibial nerve
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.18e4
  • 3.18e4
  • 3.32e4
42.27
  • 42.27
  • 39.76
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.28e4
  • 3.28e4
40.53
  • 40.53
AEIR
  • AEIR
UBERON:0001157transverse colon
  • HsapDv:0000087human adult stage (human)
3.30e4
  • 3.30e4
40.06
  • 40.06
AEIR
  • AEIR
UBERON:0002469esophagus mucosa
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
3.32e4
  • 3.32e4
  • 3.32e4
  • 3.37e4
39.72
  • 39.72
  • 39.70
  • 38.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001511skin of leg
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.36e4
  • 3.36e4
  • 3.41e4
38.95
  • 38.95
  • 38.11
AEIR
  • AEIR
  • AEIR
UBERON:0003454small intestine Peyer's patch
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000087human adult stage (human)
  • HsapDv:0000091human late adulthood stage (human)
3.39e4
  • 3.39e4
  • 3.50e4
  • 3.52e4
38.53
  • 38.53
  • 36.49
  • 36.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000113post-juvenile adult stage
3.50e4
  • 3.50e4
36.45
  • 36.45
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
4.05e4
  • 4.05e4
26.47
  • 26.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSG00000251692.

Cross-references

CCDSCCDS32362 (CCDS32362.1)
EnsemblENSG00000251692 (PTX4)
HGNCHGNC:14171 (PTX4)
EMBLAE006467, AL031705, BC156066, BC156944, CH471112
OncoMXPTX4 (PTX4)
Uniprot/SPTREMBLH3BSQ8, H3BSQ8_HUMAN
Uniprot/SWISSPROTPTX4_HUMAN, Q96A99

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