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G. gallus Gene: C6orf52 - ENSGALG00000012721 - Gallus gallus (chicken)

General information

Ensembl IDENSGALG00000012721
NameC6orf52
Descriptionchromosome 6 open reading frame 52 [Source:HGNC Symbol;Acc:HGNC:20881]
OrganismGallus gallus (chicken)
Synonym(s)trna selenocysteine 1-associated protein 1, trnau1ap
Orthologs(s)7 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
562
  • 562
96.52
  • 96.52
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
696
  • 696
95.68
  • 95.68
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
779
  • 779
95.17
  • 95.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.23e3
  • 1.23e3
92.36
  • 92.36
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0034919juvenile stage
1.38e3
  • 1.38e3
91.41
  • 91.41
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.42e3
  • 1.42e3
91.20
  • 91.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
1.47e3
  • 1.47e3
  • 2.27e3
90.86
  • 90.86
  • 85.92
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
1.89e3
  • 1.89e3
  • 2.12e3
88.25
  • 88.25
  • 86.84
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
2.44e3
  • 2.44e3
  • 2.70e3
84.88
  • 84.88
  • 83.22
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.56e3
  • 2.56e3
84.12
  • 84.12
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.61e3
  • 2.61e3
83.81
  • 83.81
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
2.78e3
  • 2.78e3
  • 3.23e3
82.72
  • 82.72
  • 79.95
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • GgalDv:00000081-year-old chicken stage (chicken)
3.86e3
  • 3.86e3
76.03
  • 76.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSGALG00000012721.

Cross-references

EnsemblENSGALG00000012721 (C6orf52)
HGNCHGNC:20881 (C6orf52)
EMBLAADN03002721
Uniprot/SPTREMBLE1BYZ9, E1BYZ9_CHICK

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