G. gallus Gene: SH3TC1 - ENSGALG00000015568 - Gallus gallus (chicken)

General information

Ensembl IDENSGALG00000015568
NameSH3TC1
DescriptionSH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
OrganismGallus gallus (chicken)
Synonym(s)flj20356
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
5.62e3
  • 5.62e3
  • 7.59e3
65.11
  • 65.11
  • 52.90
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.30e3
  • 6.30e3
60.87
  • 60.87
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
8.68e3
  • 8.68e3
  • 9.62e3
46.11
  • 46.11
  • 40.24
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
1.11e4
  • 1.11e4
  • 1.17e4
31.25
  • 31.25
  • 27.62
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
28.91
  • 28.91
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
24.96
  • 24.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota13 species14 genesCompare expression
Tetrapoda14 species15 genesCompare expression
Euteleostomi15 species16 genesCompare expression

Orthology information comes from OMA : ENSGALG00000015568.

Cross-references

EnsemblENSGALG00000015568 (SH3TC1)
HGNCHGNC:26009 (SH3TC1)
EMBLAADN03004094
Uniprot/SPTREMBLF1NC54, F1NC54_CHICK

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