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G. gallus Gene: COL21A1 - ENSGALG00000016292 - Gallus gallus (chicken)

General information

Ensembl IDENSGALG00000016292
NameCOL21A1
Descriptioncollagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
OrganismGallus gallus (chicken)
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.08e3
  • 4.08e3
74.67
  • 74.67
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
9.12e3
  • 9.12e3
  • 1.02e4
43.35
  • 43.35
  • 36.73
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.78e3
  • 9.78e3
39.29
  • 39.29
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • GgalDv:00000081-year-old chicken stage (chicken)
1.00e4
  • 1.00e4
  • 1.18e4
37.78
  • 37.78
  • 26.69
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
36.79
  • 36.79
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
36.53
  • 36.53
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
35.32
  • 35.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
30.64
  • 30.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.17e4
  • 1.17e4
27.25
  • 27.25
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
23.01
  • 23.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSGALG00000016292.

Cross-references

EnsemblENSGALG00000016292 (COL21A1)
HGNCHGNC:17025 (COL21A1)
EMBLAADN03003445
Uniprot/SPTREMBLE1BU12, E1BU12_CHICK

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